RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 TUBP50607 506 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 OGDHQ02218 1023 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 EIF4EBP2Q13542 120 aaPredicted RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 FAM72AQ5TYM5 149 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 FAM72DQ6L9T8 149 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 ZNF571Q7Z3V5 609 aaPredicted RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 FAM72BQ86X60 149 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 FAM114A1Q8IWE2 563 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 PYROXD2Q8N2H3 581 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 CPA6Q8N4T0 437 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 USP33Q8TEY7 942 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 DDI1Q8WTU0 396 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 OVCA2Q8WZ82 227 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 RPL10LQ96L21 214 aaKnown RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 TBCBQ99426 244 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 XPO4Q9C0E2 1151 aaKnown RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 TTYH3Q9C0H2 523 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 METTL5Q9NRN9 209 aaKnown RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 THADAQ6YHU6 1953 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 NUP205Q92621 2012 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 A0A1B0GTH6 734 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 CXCL12P48061 93 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 GRSF1Q12849 480 aaKnown RBP eCLIP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 PDGFRLQ15198 375 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 TRIP4Q15650 581 aaPredicted RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 APCDD1Q8J025 514 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 SUMF1Q8NBK3 374 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 E2F7Q96AV8 911 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 SIK2Q9H0K1 926 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 KIF9Q9HAQ2 790 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 ABCB8Q9NUT2 735 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 MPP6Q9NZW5 540 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 A0A1W2PQF6 199 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 GFRA2O00451 464 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 NFATC1O95644 943 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 SERPINC1P01008 464 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 IGLV3-27P01718 113 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 RALAP11233 206 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 GLDCP23378 1020 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 IL12RB1P42701 662 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 STK19P49842 368 aaPredicted RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 TBX4P57082 545 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 YWHAZP63104 245 aaKnown RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 PLCB2Q00722 1185 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 DMC1Q14565 340 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 ALFQ53S48 1182 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 FAM102AQ5T9C2 384 aaPredicted RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 PRR23BQ6ZRT6 265 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 ARMCX6Q7L4S7 300 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 FAM131BQ86XD5 332 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 RNF139Q8WU17 664 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 SLC39A13Q96H72 371 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 FAXDC2Q96IV6 333 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 BTBD6Q96KE9 485 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 SPAG5Q96R06 1193 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 ERGIC2Q96RQ1 377 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 UBXN6Q9BZV1 441 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 MKRN2Q9H000 416 aaKnown RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 PARD6AQ9NPB6 346 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 PRMT8Q9NR22 394 aaPredicted RBP5.93□□□□□ -1.46
CPNE3-208ENST00000614678 ABCC13Q9NSE7 274 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 DDIT4Q9NX09 232 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 PCDHGC3Q9UN70 934 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 ADAMTS9Q9P2N4 1935 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 CEP295Q9C0D2 2601 aa5.93□□□□□ -1.46
CPNE3-208ENST00000614678 PLK4O00444 970 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 GFRA3O60609 400 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 TBL1XO60907 577 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 UNGP13051 313 aaPredicted RBP5.92□□□□□ -1.46
CPNE3-208ENST00000614678 MZF1P28698 734 aaPredicted RBP5.92□□□□□ -1.46
CPNE3-208ENST00000614678 PBX1P40424 430 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 RPS9P46781 194 aaKnown RBP5.92□□□□□ -1.46
CPNE3-208ENST00000614678 PPP3CCP48454 512 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 YWHAEP62258 255 aaKnown RBP5.92□□□□□ -1.46
CPNE3-208ENST00000614678 LEKR1Q6ZMV7 388 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 TERB1Q8NA31 727 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 HMGB4Q8WW32 186 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 HSFY1Q96LI6 401 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 SYT11Q9BT88 431 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 RBSNQ9H1K0 784 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 PDCL3Q9H2J4 239 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 HAUS4Q9H6D7 363 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 C8orf33Q9H7E9 229 aaPredicted RBP5.92□□□□□ -1.46
CPNE3-208ENST00000614678 CD248Q9HCU0 757 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 EBF1Q9UH73 591 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 VANGL2Q9ULK5 521 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 ATXN2Q99700 1313 aaKnown RBP5.92□□□□□ -1.46
CPNE3-208ENST00000614678 PRR23AA6NEV1 266 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 PATE3B3GLJ2 98 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 M0QYT0 321 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 MAN2B1O00754 1011 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 CAPN9O14815 690 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 IGLV3-25P01717 112 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 CYP1A1P04798 512 aaPredicted RBP5.92□□□□□ -1.46
CPNE3-208ENST00000614678 GYPCP04921 128 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 TCF3P15923 654 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 PRKCHP24723 683 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 RFC1P35251 1148 aaPredicted RBP5.92□□□□□ -1.46
CPNE3-208ENST00000614678 SLC8A3P57103 927 aa5.92□□□□□ -1.46
CPNE3-208ENST00000614678 FUT11Q495W5 492 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms