RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 COMMD8Q9NX08 183 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 RRN3Q9NYV6 651 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 ANAPC5Q9UJX4 755 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 STAP1Q9ULZ2 295 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 GRXCR1A8MXD5 290 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 C5orf67F2Z3F1 127 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 TEX28O15482 410 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 CDH16O75309 829 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 CXCL14O95715 111 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 MIPP30301 263 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 ADCY8P40145 1251 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 LIG3P49916 1009 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 IFRD2Q12894 506 aaPredicted RBP12.13□□□□□ -0.47
VRK3-223ENST00000601341 IFT88Q13099 833 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 NR1H3Q13133 447 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 RASA2Q15283 850 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 CDO1Q16878 200 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 SDHAF4Q5VUM1 108 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 BSPRYQ5W0U4 402 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 HFE2Q6ZVN8 426 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 BEND5Q7L4P6 421 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 BHLHA9Q7RTU4 235 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 PIGWQ7Z7B1 504 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 FAM172AQ8WUF8 416 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 NT5C3BQ969T7 300 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 TTC25Q96NG3 672 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 SAMD11Q96NU1 681 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 PLCD4Q9BRC7 762 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 C17orf80Q9BSJ5 609 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 C11orf84Q9BUA3 381 aaPredicted RBP12.13□□□□□ -0.47
VRK3-223ENST00000601341 UBE2OQ9C0C9 1292 aaKnown RBP12.13□□□□□ -0.47
VRK3-223ENST00000601341 RABEP2Q9H5N1 569 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 ALG13Q9NP73 1137 aaKnown RBP12.13□□□□□ -0.47
VRK3-223ENST00000601341 NGRNQ9NPE2 291 aaKnown RBP12.13□□□□□ -0.47
VRK3-223ENST00000601341 IL37Q9NZH6 218 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 USP18Q9UMW8 372 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 SCML2Q9UQR0 700 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 PCDHA11Q9Y5I1 949 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 IRAK3Q9Y616 596 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 NLRC5Q86WI3 1866 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 TLDC2A0PJX2 215 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 PRPSAP2O60256 369 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 SOAT2O75908 522 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 FYNP06241 537 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 GSTA1P08263 222 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 NCAM1P13591 858 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 MYOGP15173 224 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 TCF4P15884 667 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 KLRC2P26717 231 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 YWHAQP27348 245 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 ELF1P32519 619 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 CA8P35219 290 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 ITGA8P53708 1063 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 SLC18A1P54219 525 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 SLC25A11Q02978 314 aaKnown RBP12.12□□□□□ -0.47
VRK3-223ENST00000601341 ZFYVE27Q5T4F4 411 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 SH3PXD2AQ5TCZ1 1133 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 SYPL2Q5VXT5 272 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 FAM109BQ6ICB4 259 aaPredicted RBP12.12□□□□□ -0.47
VRK3-223ENST00000601341 STRADAQ7RTN6 431 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 MON1AQ86VX9 555 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 CCDC50Q8IVM0 306 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 ARHGAP18Q8N392 663 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 ZCCHC9Q8N567 271 aaKnown RBP12.12□□□□□ -0.47
VRK3-223ENST00000601341 CCDC197Q8NCU1 140 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 GDF15Q99988 308 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 TCF25Q9BQ70 676 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 EMILIN2Q9BXX0 1053 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 CYP4F11Q9HBI6 524 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 ENTPD7Q9NQZ7 604 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 ABCC13Q9NSE7 274 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 PCSK1NQ9UHG2 260 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 NAALADL1Q9UQQ1 740 aa12.12□□□□□ -0.47
VRK3-223ENST00000601341 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.11□□□□□ -0.47
VRK3-223ENST00000601341 FAM92AA1XBS5 289 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 SMAPO00193 183 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 SEC24AO95486 1093 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 TRUB2O95900 331 aaKnown RBP12.11□□□□□ -0.47
VRK3-223ENST00000601341 ADH1AP07327 375 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 CA3P07451 260 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 CNPP09543 421 aaKnown RBP12.11□□□□□ -0.47
VRK3-223ENST00000601341 IL1R2P27930 398 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 GJC1P36383 396 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 ALDH1A3P47895 512 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 SULT1E1P49888 294 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 HDAC4P56524 1084 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 YWHAGP61981 247 aaKnown RBP eCLIP12.11□□□□□ -0.47
VRK3-223ENST00000601341 IFI35P80217 286 aaPredicted RBP12.11□□□□□ -0.47
VRK3-223ENST00000601341 BOLA3Q53S33 107 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 BTBD8Q5XKL5 378 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 HIBCHQ6NVY1 386 aaPredicted RBP12.11□□□□□ -0.47
VRK3-223ENST00000601341 ANKS1BQ7Z6G8 1248 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 EXOC3L1Q86VI1 746 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 TDRPQ86YL5 185 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 TCEAL8Q8IYN2 117 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 SPPL3Q8TCT6 385 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 GPR152Q8TDT2 470 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 EPS8L3Q8TE67 593 aaKnown RBP12.11□□□□□ -0.47
VRK3-223ENST00000601341 POF1BQ8WVV4 589 aa12.11□□□□□ -0.47
VRK3-223ENST00000601341 NKD2Q969F2 451 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms