RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PPP1R26Q5T8A7 1209 aaPredicted RBP13.11□□□□□ -0.31
TRIM28-212ENST00000597995 ANKRD40Q6AI12 368 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 CCNI2Q6ZMN8 369 aaPredicted RBP13.11□□□□□ -0.31
TRIM28-212ENST00000597995 DBX2Q6ZNG2 339 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 ANKS1BQ7Z6G8 1248 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 ZC3H3Q8IXZ2 948 aaKnown RBP13.11□□□□□ -0.31
TRIM28-212ENST00000597995 RBBP8NLQ8NC74 664 aaPredicted RBP13.11□□□□□ -0.31
TRIM28-212ENST00000597995 SEMA4DQ92854 862 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 RASAL2Q9UJF2 1139 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 PCOLCE2Q9UKZ9 415 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 AGO1Q9UL18 857 aaKnown RBP13.11□□□□□ -0.31
TRIM28-212ENST00000597995 STRIP2Q9ULQ0 834 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 ANKRD11Q6UB99 2663 aaPredicted RBP13.11□□□□□ -0.31
TRIM28-212ENST00000597995 TRIM49BA6NDI0 452 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 BCAT2O15382 392 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-212ENST00000597995 CER1O95813 267 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 C7P10643 843 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 ACADMP11310 421 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 KRT13P13646 458 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 CD44P16070 742 aaKnown RBP13.1□□□□□ -0.31
TRIM28-212ENST00000597995 BMP6P22004 513 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 GTF2H1P32780 548 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 COPAP53621 1224 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 SCAPQ12770 1279 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 EFEMP1Q12805 493 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 RAB41Q5JT25 222 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 DCAF12L1Q5VU92 463 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 ISM2Q6H9L7 571 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 DENND1CQ8IV53 801 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 FAM217AQ8IXS0 508 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 ELOA2Q8IYF1 753 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-212ENST00000597995 ZCCHC9Q8N567 271 aaKnown RBP13.1□□□□□ -0.31
TRIM28-212ENST00000597995 HEXIM2Q96MH2 286 aaKnown RBP13.1□□□□□ -0.31
TRIM28-212ENST00000597995 MIR1-1HGQ9H1L0 117 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 MMRN2Q9H8L6 949 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 TMEM8AQ9HCN3 771 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 RMND1Q9NWS8 449 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 MARCH2Q9P0N8 246 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 PCDHGB2Q9Y5G2 931 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 CKAP5Q14008 2032 aa13.1□□□□□ -0.31
TRIM28-212ENST00000597995 HMBSP08397 361 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 PRKCHP24723 683 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 MATKP42679 507 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 ZNF445P59923 1031 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 YWHAGP61981 247 aaKnown RBP eCLIP13.09□□□□□ -0.31
TRIM28-212ENST00000597995 PDE4CQ08493 712 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 ACAP1Q15027 740 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 ZNF394Q53GI3 561 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 ARHGAP17Q68EM7 881 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 KRT39Q6A163 491 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 PM20D1Q6GTS8 502 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 RSRC2Q7L4I2 434 aaKnown RBP13.09□□□□□ -0.31
TRIM28-212ENST00000597995 SLCO6A1Q86UG4 719 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 PIGZQ86VD9 579 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 PNPLA1Q8N8W4 532 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 C1orf216Q8TAB5 229 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 DDI1Q8WTU0 396 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 SMARCE1Q969G3 411 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 PLD4Q96BZ4 506 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 CCDC34Q96HJ3 373 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 TMEM176AQ96HP8 235 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 CDC6Q99741 560 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 CIPCQ9C0C6 399 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 GAREM1Q9H706 876 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 TM7SF3Q9NS93 570 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 MAN1B1Q9UKM7 699 aa13.09□□□□□ -0.31
TRIM28-212ENST00000597995 KNL1Q8NG31 2342 aa13.08□□□□□ -0.31
TRIM28-212ENST00000597995 FASNP49327 2511 aaKnown RBP13.08□□□□□ -0.32
TRIM28-212ENST00000597995 CABIN1Q9Y6J0 2220 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 SLC12A8A0AV02 714 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 CETN3O15182 167 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 SMC2O95347 1197 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 EPHX1P07099 455 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 SLC8A3P57103 927 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 BNC1Q01954 994 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 ARID5AQ03989 594 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 CAMK2GQ13555 558 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-212ENST00000597995 TRIP4Q15650 581 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-212ENST00000597995 HLA-BQ31612 363 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 CBWD6Q4V339 395 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 MPPE1Q53F39 396 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 CBWD3Q5JTY5 395 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 CBWD5Q5RIA9 395 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 TMEM215Q68D42 235 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 SERPINA13PQ6UXR4 307 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 ANKRD52Q8NB46 1076 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 SLC4A11Q8NBS3 891 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 OR2T3Q8NH03 318 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 BAHD1Q8TBE0 780 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-212ENST00000597995 SETD7Q8WTS6 366 aaKnown RBP13.08□□□□□ -0.32
TRIM28-212ENST00000597995 CCDC86Q9H6F5 360 aaKnown RBP13.08□□□□□ -0.32
TRIM28-212ENST00000597995 IL21RQ9HBE5 538 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 OSGEPQ9NPF4 335 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 CISHQ9NSE2 258 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 OLA1Q9NTK5 396 aaKnown RBP13.08□□□□□ -0.32
TRIM28-212ENST00000597995 EIF2B4Q9UI10 523 aaKnown RBP13.08□□□□□ -0.32
TRIM28-212ENST00000597995 CLEC4EQ9ULY5 219 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 GPSM3Q9Y4H4 160 aa13.08□□□□□ -0.32
TRIM28-212ENST00000597995 PLXNB3Q9ULL4 1909 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 ACACAQ13085 2346 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms