RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 O00370 1275 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 ACADMP11310 421 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 NCAM1P13591 858 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 IL12RB1P42701 662 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 MAPK8P45983 427 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 ARID5AQ03989 594 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 ZBTB16Q05516 673 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 RING1Q06587 406 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 ZNF234Q14588 700 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 ZNF423Q2M1K9 1284 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 GOLGA7BQ2TAP0 167 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 PKDCCQ504Y2 493 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 BSPRYQ5W0U4 402 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 NUGGCQ68CJ6 796 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 ANKRD40Q6AI12 368 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 MSANTD2Q6P1R3 559 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 BHLHA9Q7RTU4 235 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 TMPRSS6Q8IU80 811 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 FMNL3Q8IVF7 1028 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 UNC45BQ8IWX7 931 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 SMYD4Q8IYR2 804 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-211ENST00000597968 RGL4Q8IZJ4 473 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 MINDY1Q8N5J2 469 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 UBR7Q8N806 425 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.22□□□□□ -0.13
TRIM28-211ENST00000597968 DEFB124Q8NES8 71 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 ENGASEQ8NFI3 743 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 SIPA1Q96FS4 1042 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 HSFY1Q96LI6 401 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 NUP58Q9BVL2 599 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 ADAM33Q9BZ11 813 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 CHD8Q9HCK8 2581 aa14.22□□□□□ -0.13
TRIM28-211ENST00000597968 ATXN2Q99700 1313 aaKnown RBP14.21□□□□□ -0.13
TRIM28-211ENST00000597968 MYO18AQ92614 2054 aaKnown RBP14.21□□□□□ -0.13
TRIM28-211ENST00000597968 A0A1B0GTW7 788 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 FAM221BA6H8Z2 402 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 WASH3PC4AMC7 463 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 ZNF883P0CG24 379 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 GCNT1Q02742 428 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 ADIGQ0VDE8 80 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 FOXC1Q12948 553 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 NNTQ13423 1086 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 CNGA2Q16280 664 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 MEA1Q16626 185 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 IL27RAQ6UWB1 636 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 KIAA1324Q6UXG2 1013 aaKnown RBP14.21□□□□□ -0.13
TRIM28-211ENST00000597968 KIAA0907Q7Z7F0 614 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-211ENST00000597968 AHI1Q8N157 1196 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 SLC35F5Q8WV83 523 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 GOLGA1Q92805 767 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 BHMTQ93088 406 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 TMA16Q96EY4 203 aaKnown RBP14.21□□□□□ -0.13
TRIM28-211ENST00000597968 EEF2KMTQ96G04 330 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 TOE1Q96GM8 510 aaKnown RBP14.21□□□□□ -0.13
TRIM28-211ENST00000597968 NT5C1BQ96P26 610 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 TRIM62Q9BVG3 475 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 MKRN2Q9H000 416 aaKnown RBP14.21□□□□□ -0.13
TRIM28-211ENST00000597968 PLA2G4CQ9UP65 541 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 RAD54BQ9Y620 910 aa14.21□□□□□ -0.13
TRIM28-211ENST00000597968 CFAP47Q6ZTR5 3102 aa14.21□□□□□ -0.14
TRIM28-211ENST00000597968 WDFY3Q8IZQ1 3526 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 BICDL2A1A5D9 508 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 SART1O43290 800 aaKnown RBP14.2□□□□□ -0.14
TRIM28-211ENST00000597968 GJB3O75712 270 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 FBXO21O94952 628 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 GNA14O95837 355 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 ATP5BP06576 529 aaKnown RBP14.2□□□□□ -0.14
TRIM28-211ENST00000597968 HMBSP08397 361 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 CD19P15391 556 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 HOXD9P28356 352 aaPredicted RBP14.2□□□□□ -0.14
TRIM28-211ENST00000597968 FMO5P49326 533 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 TPMTP51580 245 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 COPAP53621 1224 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 DAOAP59103 153 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 CAMK2GQ13555 558 aaPredicted RBP14.2□□□□□ -0.14
TRIM28-211ENST00000597968 BECN1Q14457 450 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 PLEKHG6Q3KR16 790 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 SERPINA13PQ6UXR4 307 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 BEND5Q7L4P6 421 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 OR2T3Q8NH03 318 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 P2RY11Q96G91 374 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 DDX50Q9BQ39 737 aaKnown RBP14.2□□□□□ -0.14
TRIM28-211ENST00000597968 GTPBP2Q9BX10 602 aaKnown RBP14.2□□□□□ -0.14
TRIM28-211ENST00000597968 CIPCQ9C0C6 399 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 OSGEPQ9NPF4 335 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 MSRB2Q9Y3D2 182 aa14.2□□□□□ -0.14
TRIM28-211ENST00000597968 YJEFN3A6XGL0 299 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 METTL12A8MUP2 240 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 MEI4A8MW99 385 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 E7ENQ6 273 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 IGLV3-27P01718 113 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 EPHX1P07099 455 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 CD59P13987 128 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 HLA-FP30511 346 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 SLC11A2P49281 568 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 PMS1P54277 932 aaKnown RBP14.19□□□□□ -0.14
TRIM28-211ENST00000597968 SFSWAPQ12872 951 aaKnown RBP14.19□□□□□ -0.14
TRIM28-211ENST00000597968 TMEM270Q6UE05 265 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 KDM1BQ8NB78 822 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 ERCC4Q92889 916 aaPredicted RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms