RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 OR12D3Q9UGF7 316 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 PATJQ8NI35 1801 aa15.8■□□□□ 0.12
TRIM28-209ENST00000597423 hCG_1818297A0A087WSY0 165 aa15.79■□□□□ 0.12
TRIM28-209ENST00000597423 C3orf70A6NLC5 250 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-209ENST00000597423 EFCAB8A8MWE9 144 aa15.79■□□□□ 0.12
TRIM28-209ENST00000597423 PDE2AO00408 941 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-209ENST00000597423 MSI1O43347 362 aaKnown RBP15.79■□□□□ 0.12
TRIM28-209ENST00000597423 RHOP08100 348 aa15.79■□□□□ 0.12
TRIM28-209ENST00000597423 HOXB8P17481 243 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-209ENST00000597423 MLLT6P55198 1093 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-209ENST00000597423 ANKRD20A8PQ5CZ79 823 aa15.79■□□□□ 0.12
TRIM28-209ENST00000597423 GAREM2Q75VX8 874 aa15.79■□□□□ 0.12
TRIM28-209ENST00000597423 TMEM150AQ86TG1 271 aa15.79■□□□□ 0.12
TRIM28-209ENST00000597423 CCDC26Q8TAB7 109 aa15.79■□□□□ 0.12
TRIM28-209ENST00000597423 SMG7Q92540 1137 aaKnown RBP15.79■□□□□ 0.12
TRIM28-209ENST00000597423 FCRL2Q96LA5 508 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-209ENST00000597423 GPATCH2LQ9NWQ4 482 aa15.79■□□□□ 0.12
TRIM28-209ENST00000597423 DNMT3BQ9UBC3 853 aaKnown RBP15.79■□□□□ 0.12
TRIM28-209ENST00000597423 A0A1W2PRU2 124 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 EEF2KO00418 725 aaKnown RBP15.78■□□□□ 0.12
TRIM28-209ENST00000597423 APOL1O14791 398 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 CREB3O43889 395 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 CST8O60676 142 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 PAGE1O75459 146 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 PAPLNO95428 1278 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 IGLV3-27P01718 113 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 HMBSP08397 361 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 KRT10P13645 584 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 TPI1P60174 286 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 SLC7A9P82251 487 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 NRG1Q02297 640 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-209ENST00000597423 LMNB2Q03252 620 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 ZNF697Q5TEC3 545 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 TXNDC8Q6A555 127 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 AADACL2Q6P093 401 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 BBS12Q6ZW61 710 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 ADAT2Q7Z6V5 191 aaKnown RBP15.78■□□□□ 0.12
TRIM28-209ENST00000597423 DDX42Q86XP3 938 aaKnown RBP eCLIP15.78■□□□□ 0.12
TRIM28-209ENST00000597423 UBXN4Q92575 508 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 MAGOHBQ96A72 148 aaKnown RBP15.78■□□□□ 0.12
TRIM28-209ENST00000597423 KCTD15Q96SI1 283 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-209ENST00000597423 KLF16Q9BXK1 252 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-209ENST00000597423 AP1M1Q9BXS5 423 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 SIK2Q9H0K1 926 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 TASP1Q9H6P5 420 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 LSM7Q9UK45 103 aaKnown RBP15.78■□□□□ 0.12
TRIM28-209ENST00000597423 COLQQ9Y215 455 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-209ENST00000597423 ZNF510Q9Y2H8 683 aa15.78■□□□□ 0.12
TRIM28-209ENST00000597423 C2orf78A6NCI8 922 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 TADA3O75528 432 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 LATS1O95835 1130 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 MOCS2O96007 188 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-209ENST00000597423 CKMP06732 381 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 CD48P09326 243 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 TGM2P21980 687 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 IL4RP24394 825 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 CHRNA3P32297 505 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 AVPR1AP37288 418 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 NR2C2P49116 596 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 KCNC3Q14003 757 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 CCNG2Q16589 344 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 CA9Q16790 459 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 GLE1Q53GS7 698 aaKnown RBP15.77■□□□□ 0.12
TRIM28-209ENST00000597423 TCEAL5Q5H9L2 206 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 GPR158Q5T848 1215 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 RFX8Q6ZV50 586 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 MAATS1Q7Z4T9 603 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 GRASPQ7Z6J2 395 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-209ENST00000597423 MMGT1Q8N4V1 131 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 ARL14EPQ8N8R7 260 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-209ENST00000597423 MAB21L3Q8N8X9 362 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 TSC1Q92574 1164 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 P3H4Q92791 437 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 FAF2Q96CS3 445 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 CSPG4P5Q96PW8 444 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 RNF38Q9H0F5 515 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 SLITRK6Q9H5Y7 841 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 RETREG1Q9H6L5 497 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 CATSPERBQ9H7T0 1116 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 MTMR10Q9NXD2 777 aa15.77■□□□□ 0.12
TRIM28-209ENST00000597423 CWC15Q9P013 229 aaKnown RBP15.77■□□□□ 0.12
TRIM28-209ENST00000597423 MRPS23Q9Y3D9 190 aaKnown RBP15.77■□□□□ 0.12
TRIM28-209ENST00000597423 FGF10O15520 208 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-209ENST00000597423 ZNF189O75820 626 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-209ENST00000597423 OLFM2O95897 454 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 POU3F3P20264 500 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-209ENST00000597423 CYP4F8P98187 520 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 HYAL1Q12794 435 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 MMRN1Q13201 1228 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 KLF1Q13351 362 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-209ENST00000597423 LLGL1Q15334 1064 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 CES5AQ6NT32 575 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 TMC5Q6UXY8 1006 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 VN1R2Q8NFZ6 395 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 SHKBP1Q8TBC3 707 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 GRK7Q8WTQ7 553 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 ZNF707Q96C28 371 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-209ENST00000597423 TBC1D31Q96DN5 1066 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 PRDM12Q9H4Q4 367 aa15.76■□□□□ 0.11
TRIM28-209ENST00000597423 LRRC19Q9H756 370 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms