RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 RAI2Q9Y5P3 530 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 PTPRDP23468 1912 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 FAM92AA1XBS5 289 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 TMEM191CA6NGB0 347 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 SLC38A8A6NNN8 435 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 YJEFN3A6XGL0 299 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 E7ENQ6 273 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 BUB1O43683 1085 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 KRT86O43790 486 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 GRAP2O75791 330 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 MTA2O94776 668 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 EPN2O95208 641 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 ZBED1O96006 694 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 GLUD1P00367 558 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 FYNP06241 537 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 HMGA1P17096 107 aaKnown RBP9.87□□□□□ -0.83
TRIM28-208ENST00000597172 CSRP1P21291 193 aaKnown RBP9.87□□□□□ -0.83
TRIM28-208ENST00000597172 ELF1P32519 619 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 SNX16P57768 344 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 DAOAP59103 153 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 SATB1Q01826 763 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 OGDHQ02218 1023 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 TWF1Q12792 350 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 PLA2G2CQ5R387 149 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 HEATR6Q6AI08 1181 aaKnown RBP9.87□□□□□ -0.83
TRIM28-208ENST00000597172 TRNP1Q6NT89 227 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 DNAJC24Q6P3W2 148 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 DENND5BQ6ZUT9 1274 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 MTSS1LQ765P7 747 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 ZDHHC17Q8IUH5 632 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 SIX6OS1Q8N1H7 587 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 RNF10Q8N5U6 811 aaKnown RBP9.87□□□□□ -0.83
TRIM28-208ENST00000597172 MSANTD4Q8NCY6 345 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 JOSD2Q8TAC2 188 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 IPO4Q8TEX9 1081 aaKnown RBP9.87□□□□□ -0.83
TRIM28-208ENST00000597172 RFFLQ8WZ73 363 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 ZNF707Q96C28 371 aaPredicted RBP9.87□□□□□ -0.83
TRIM28-208ENST00000597172 BTBD6Q96KE9 485 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 CEP295NLQ96MC4 621 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 TTLL2Q9BWV7 592 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 TSGA10Q9BZW7 698 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 SMOC1Q9H4F8 434 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 CNGB3Q9NQW8 809 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 COMMD8Q9NX08 183 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 CTTNBP2NLQ9P2B4 639 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 UVRAGQ9P2Y5 699 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 NDRG2Q9UN36 371 aaKnown RBP9.87□□□□□ -0.83
TRIM28-208ENST00000597172 SCML2Q9UQR0 700 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 YIPF1Q9Y548 306 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 COL6A6A6NMZ7 2263 aa9.87□□□□□ -0.83
TRIM28-208ENST00000597172 GON4LQ3T8J9 2241 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 MACROD2A1Z1Q3 448 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 PRRG1O14668 218 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 CCP110O43303 1012 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 C1QL1O75973 258 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 FBXO21O94952 628 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 MOCS3O95396 460 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 KRT3P12035 628 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 YWHAQP27348 245 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 RFC1P35251 1148 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-208ENST00000597172 SCNN1AP37088 669 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 NOP2P46087 812 aaKnown RBP9.86□□□□□ -0.83
TRIM28-208ENST00000597172 ALDH1A3P47895 512 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 HADHBP55084 474 aaKnown RBP9.86□□□□□ -0.83
TRIM28-208ENST00000597172 RNASE9P60153 205 aaKnown RBP9.86□□□□□ -0.83
TRIM28-208ENST00000597172 ARHGAP29Q52LW3 1261 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 EFHC1Q5JVL4 640 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 FAM102AQ5T9C2 384 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-208ENST00000597172 SLC26A9Q7LBE3 791 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 DNAJB7Q7Z6W7 309 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-208ENST00000597172 SCD5Q86SK9 330 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 RHOT2Q8IXI1 618 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 TXLNBQ8N3L3 684 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 EMC1Q8N766 993 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 TPCN2Q8NHX9 752 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 SLC7A14Q8TBB6 771 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 ZNF564Q8TBZ8 553 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-208ENST00000597172 IRGQQ8WZA9 623 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 PLEKHA4Q9H4M7 779 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 LMAN1LQ9HAT1 526 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 MRPL47Q9HD33 250 aaKnown RBP9.86□□□□□ -0.83
TRIM28-208ENST00000597172 METTL5Q9NRN9 209 aaKnown RBP9.86□□□□□ -0.83
TRIM28-208ENST00000597172 ASNSD1Q9NWL6 643 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 INSL5Q9Y5Q6 135 aa9.86□□□□□ -0.83
TRIM28-208ENST00000597172 GRID2IPA4D2P6 1211 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 GOLGA6L9A6NEM1 432 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 C2CD4BA6NLJ0 364 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 ESPNB1AK53 854 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 J3QKU1 62 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 MAN2B1O00754 1011 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 BUB1BO60566 1050 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-208ENST00000597172 ZMYND10O75800 440 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 RTN3O95197 1032 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-208ENST00000597172 C8AP07357 584 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 GLI1P08151 1106 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 ZDHHC11BP0C7U3 371 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 FSHRP23945 695 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 FLT3P36888 993 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 EPHB3P54753 998 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 YWHAZP63104 245 aaKnown RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms