RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 USP3Q9Y6I4 520 aa9.08□□□□□ -0.96
SMAD4-206ENST00000588860 NYNRINQ9P2P1 1898 aaKnown RBP9.08□□□□□ -0.96
SMAD4-206ENST00000588860 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 BCLAF3A2AJT9 711 aaKnown RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 GOLGA8MH3BSY2 632 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 EEF2KO00418 725 aaKnown RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 RGS16O15492 202 aaPredicted RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 CREB3O43889 395 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 MAP3K6O95382 1288 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 TTC4O95801 387 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 F9P00740 461 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 CXCL10P02778 98 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 RBL1P28749 1068 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 STIP1P31948 543 aaKnown RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 HPDP32754 393 aaPredicted RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 ADRA1BP35368 520 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 ACTN2P35609 894 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 ATP1A2P50993 1020 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 SLC5A3P53794 718 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 NRLP54845 237 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 AIF1P55008 147 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 YWHAGP61981 247 aaKnown RBP eCLIP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 BASP1P80723 227 aaKnown RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 SKOR1P84550 965 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 TLE2Q04725 743 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 XRCC4Q13426 336 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 KYNUQ16719 465 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 GLIPR1L2Q4G1C9 344 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 CTXN3Q4LDR2 81 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 SLC45A4Q5BKX6 768 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 FAM171A1Q5VUB5 890 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 ANKRD22Q5VYY1 191 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 BSPRYQ5W0U4 402 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 NCBP2-AS2Q69YL0 99 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 PM20D1Q6GTS8 502 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 ZNF280DQ6N043 979 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 THSD4Q6ZMP0 1018 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 FAM43BQ6ZT52 329 aaPredicted RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 CENPUQ71F23 418 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 ANKRD33Q7Z3H0 272 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 UBE2Q1Q7Z7E8 422 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 CCDC33Q8N5R6 958 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 SCAMP5Q8TAC9 235 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 LRRN4Q8WUT4 740 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 CPT1BQ92523 772 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 RNF34Q969K3 372 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 NTAN1Q96AB6 310 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 B3GALT6Q96L58 329 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 C9orf72Q96LT7 481 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 PGLYRP2Q96PD5 576 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 TMEM175Q9BSA9 504 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 TMEM109Q9BVC6 243 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 PRDM16Q9HAZ2 1276 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 USP29Q9HBJ7 922 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 WDR6Q9NNW5 1121 aaKnown RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 ARHGEF4Q9NR80 690 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 ETNK2Q9NVF9 386 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 MARCH5Q9NX47 278 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 PAK5Q9P286 719 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 XPO7Q9UIA9 1087 aaKnown RBP9.07□□□□□ -0.96
SMAD4-206ENST00000588860 PCDHB5Q9Y5E4 795 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 TTC28Q96AY4 2481 aa9.07□□□□□ -0.96
SMAD4-206ENST00000588860 SF3B1O75533 1304 aaKnown RBP eCLIP9.06□□□□□ -0.963e-6■■■■■ 137.9
SMAD4-206ENST00000588860 ANAPC1Q9H1A4 1944 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.06□□□□□ -0.96
SMAD4-206ENST00000588860 TCRBV7S3A2A0A539 114 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 OR6C75A6NL08 312 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 TNFRSF10BO14763 440 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 RASGRF2O14827 1237 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 TRIM66O15016 1216 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 MFSD11O43934 449 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 PARNO95453 639 aaKnown RBP9.06□□□□□ -0.96
SMAD4-206ENST00000588860 ALDH2P05091 517 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 IVLP07476 585 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 CAPN2P17655 700 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 FGFR3P22607 806 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 BMP8BP34820 402 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 SLCO1A2P46721 670 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 NR2C2P49116 596 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 CXCR3P49682 368 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 GPR15P49685 360 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 ARPP19P56211 112 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 ARL4CP56559 192 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 TPI1P60174 286 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 MAGOHP61326 146 aaKnown RBP9.06□□□□□ -0.96
SMAD4-206ENST00000588860 GNGT1P63211 74 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 GAD2Q05329 585 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 FAAP100Q0VG06 881 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 SCAPQ12770 1279 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 SLC10A2Q12908 348 aaPredicted RBP9.06□□□□□ -0.96
SMAD4-206ENST00000588860 PDIA2Q13087 525 aaKnown RBP9.06□□□□□ -0.96
SMAD4-206ENST00000588860 DPYSQ14117 519 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 NFE2Q16621 373 aaPredicted RBP9.06□□□□□ -0.96
SMAD4-206ENST00000588860 HIF1AQ16665 826 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 LRIT3Q3SXY7 679 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 ARL13BQ3SXY8 428 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 HP1BP3Q5SSJ5 553 aaPredicted RBP9.06□□□□□ -0.96
SMAD4-206ENST00000588860 C6orf118Q5T5N4 469 aa9.06□□□□□ -0.96
SMAD4-206ENST00000588860 SDHAF4Q5VUM1 108 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms