RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ABCC13Q9NSE7 274 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 CYP8B1Q9UNU6 501 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 ACACBO00763 2458 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 MSI1O43347 362 aaKnown RBP21.37■■□□□ 1.01
SHMT1-209ENST00000582653 TIMM44O43615 452 aa21.37■■□□□ 1.01
SHMT1-209ENST00000582653 TSPAN3O60637 253 aa21.37■■□□□ 1.01
SHMT1-209ENST00000582653 SERPINF2P08697 491 aa21.37■■□□□ 1.01
SHMT1-209ENST00000582653 GCNT1Q02742 428 aa21.37■■□□□ 1.01
SHMT1-209ENST00000582653 RABEPKQ7Z6M1 372 aa21.37■■□□□ 1.01
SHMT1-209ENST00000582653 CREBRFQ8IUR6 639 aa21.37■■□□□ 1.01
SHMT1-209ENST00000582653 DDI1Q8WTU0 396 aa21.37■■□□□ 1.01
SHMT1-209ENST00000582653 ELOVL2Q9NXB9 296 aa21.37■■□□□ 1.01
SHMT1-209ENST00000582653 KIAA1468Q9P260 1216 aa21.37■■□□□ 1.01
SHMT1-209ENST00000582653 HBS1LQ9Y450 684 aaKnown RBP21.37■■□□□ 1.01
SHMT1-209ENST00000582653 TNRC6BQ9UPQ9 1833 aaKnown RBP21.36■■□□□ 1.01
SHMT1-209ENST00000582653 KRT37O76014 449 aa21.36■■□□□ 1.01
SHMT1-209ENST00000582653 HARS2P49590 506 aaKnown RBP21.36■■□□□ 1.01
SHMT1-209ENST00000582653 UBE2HP62256 183 aa21.36■■□□□ 1.01
SHMT1-209ENST00000582653 GFPT1Q06210 699 aaPredicted RBP21.36■■□□□ 1.01
SHMT1-209ENST00000582653 SLC41A1Q8IVJ1 513 aa21.36■■□□□ 1.01
SHMT1-209ENST00000582653 SCML4Q8N228 414 aa21.36■■□□□ 1.01
SHMT1-209ENST00000582653 TRIML1Q8N9V2 468 aa21.36■■□□□ 1.01
SHMT1-209ENST00000582653 MED15Q96RN5 788 aa21.36■■□□□ 1.01
SHMT1-209ENST00000582653 MIS12Q9H081 205 aa21.36■■□□□ 1.01
SHMT1-209ENST00000582653 CAPN10Q9HC96 672 aa21.36■■□□□ 1.01
SHMT1-209ENST00000582653 ITM2CQ9NQX7 267 aa21.36■■□□□ 1.01
SHMT1-209ENST00000582653 ATXN2Q99700 1313 aaKnown RBP21.35■■□□□ 1.01
SHMT1-209ENST00000582653 NDUFS2O75306 463 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 CFIP05156 583 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 IL12RB1P42701 662 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 MAPK8P45983 427 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 STARD3Q14849 445 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 EIF4HQ15056 248 aaKnown RBP21.35■■□□□ 1.01
SHMT1-209ENST00000582653 FUT11Q495W5 492 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 MPPE1Q53F39 396 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 ANKS1BQ7Z6G8 1248 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 FOXJ1Q92949 421 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 PRDM16Q9HAZ2 1276 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 UBE2TQ9NPD8 197 aaPredicted RBP21.35■■□□□ 1.01
SHMT1-209ENST00000582653 CD93Q9NPY3 652 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 STOML2Q9UJZ1 356 aa21.35■■□□□ 1.01
SHMT1-209ENST00000582653 UPK3BL1B0FP48 263 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 UPK3BL2E5RIL1 263 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 KRT5P13647 590 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 ATXN3P54252 364 aaPredicted RBP21.34■■□□□ 1.01
SHMT1-209ENST00000582653 ZNF252P-AS1Q0IIN9 211 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 SEMA3BQ13214 749 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 STILQ15468 1287 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 GJB7Q6PEY0 223 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 SORCS1Q8WY21 1168 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 CRACR2AQ9BSW2 395 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 MKRN2Q9H000 416 aaKnown RBP21.34■■□□□ 1.01
SHMT1-209ENST00000582653 SLC32A1Q9H598 525 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 RWDD2AQ9UIY3 292 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 CNTN6Q9UQ52 1028 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 EPG5Q9HCE0 2579 aa21.34■■□□□ 1.01
SHMT1-209ENST00000582653 KMT2BQ9UMN6 2715 aaPredicted RBP21.34■■□□□ 1.01
SHMT1-209ENST00000582653 ARHGAP33O14559 1287 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 FGFR1OPO95684 399 aaKnown RBP21.33■■□□□ 1.01
SHMT1-209ENST00000582653 LTFP02788 710 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 CD6P30203 668 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 ZNF445P59923 1031 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 APBA1Q02410 837 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 ZNF234Q14588 700 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 SYCP2LQ5T4T6 812 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 ADGRF1Q5T601 910 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 TMEM215Q68D42 235 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 DENND1BQ6P3S1 775 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 KIAA1324Q6UXG2 1013 aaKnown RBP21.33■■□□□ 1.01
SHMT1-209ENST00000582653 TMPRSS6Q8IU80 811 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 SCUBE3Q8IX30 993 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 DEFB124Q8NES8 71 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 IRGQQ8WZA9 623 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 TMA16Q96EY4 203 aaKnown RBP21.33■■□□□ 1.01
SHMT1-209ENST00000582653 HSFY1Q96LI6 401 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 HSPA12BQ96MM6 686 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 ACP6Q9NPH0 428 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 WSB2Q9NYS7 404 aaPredicted RBP21.33■■□□□ 1.01
SHMT1-209ENST00000582653 CHMP5Q9NZZ3 219 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 WASF3Q9UPY6 502 aa21.33■■□□□ 1.01
SHMT1-209ENST00000582653 GON4LQ3T8J9 2241 aa21.33■■□□□ 1
SHMT1-209ENST00000582653 CEP192Q8TEP8 1941 aa21.33■■□□□ 1
SHMT1-209ENST00000582653 GOLGA6L7A0A1B0GV03 622 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 SYNCRIPO60506 623 aaKnown RBP21.32■■□□□ 1
SHMT1-209ENST00000582653 LATS1O95835 1130 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 SYPP08247 313 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 SLC9A1P19634 815 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 HOXD9P28356 352 aaPredicted RBP21.32■■□□□ 1
SHMT1-209ENST00000582653 GPD2P43304 727 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 MSANTD2Q6P1R3 559 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 PIP4P1Q86T03 277 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 RGL4Q8IZJ4 473 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 HDDC3Q8N4P3 179 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 GTPBP2Q9BX10 602 aaKnown RBP21.32■■□□□ 1
SHMT1-209ENST00000582653 CIPCQ9C0C6 399 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 FSCN3Q9NQT6 498 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 ST7Q9NRC1 585 aa21.32■■□□□ 1
SHMT1-209ENST00000582653 USP36Q9P275 1121 aaKnown RBP21.32■■□□□ 1
SHMT1-209ENST00000582653 LETM1O95202 739 aaPredicted RBP21.31■■□□□ 1
SHMT1-209ENST00000582653 FYNP06241 537 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms