RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 DNAJC3Q13217 504 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 RABEP1Q15276 862 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 FNDC3BQ53EP0 1204 aaKnown RBP13.36□□□□□ -0.27
SS18-219ENST00000581570 PRAMEF14Q5SWL7 426 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 CLEC20AQ6ZU45 233 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 SCD5Q86SK9 330 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 UNC93AQ86WB7 457 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 NELFCDQ8IXH7 590 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 ZNF276Q8N554 614 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 PDILTQ8N807 584 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 SNIP1Q8TAD8 396 aaKnown RBP13.36□□□□□ -0.27
SS18-219ENST00000581570 DDI1Q8WTU0 396 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 HNRNPABQ99729 332 aaKnown RBP13.36□□□□□ -0.27
SS18-219ENST00000581570 ACE2Q9BYF1 805 aaPredicted RBP13.36□□□□□ -0.27
SS18-219ENST00000581570 HMGXB4Q9UGU5 601 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 AGO1Q9UL18 857 aaKnown RBP13.36□□□□□ -0.27
SS18-219ENST00000581570 PLA2G4CQ9UP65 541 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 VILLO15195 856 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 C4BPAP04003 597 aaKnown RBP13.35□□□□□ -0.27
SS18-219ENST00000581570 DNTTP04053 509 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 TRIM21P19474 475 aaKnown RBP13.35□□□□□ -0.27
SS18-219ENST00000581570 ABCB4P21439 1286 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 KIF11P52732 1056 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 RPS14P62263 151 aaKnown RBP13.35□□□□□ -0.27
SS18-219ENST00000581570 RACK1P63244 317 aaKnown RBP13.35□□□□□ -0.27
SS18-219ENST00000581570 ZBTB16Q05516 673 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 EFEMP1Q12805 493 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 FAM26FQ5R3K3 315 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 HES3Q5TGS1 186 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 CCDC186Q7Z3E2 898 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 DENND1CQ8IV53 801 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 CPXM2Q8N436 756 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 ZNF366Q8N895 744 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 PLEKHO2Q8TD55 490 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 CYB5D2Q8WUJ1 264 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 FGF11Q92914 225 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 SKA1Q96BD8 255 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 CYFIP2Q96F07 1278 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 CDK5RAP1Q96SZ6 601 aaKnown RBP13.35□□□□□ -0.27
SS18-219ENST00000581570 ELF4Q99607 663 aaPredicted RBP13.35□□□□□ -0.27
SS18-219ENST00000581570 ORAI3Q9BRQ5 295 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 TNMDQ9H2S6 317 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 TMEM245Q9H330 911 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 SGK2Q9HBY8 427 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 PNPLA8Q9NP80 782 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 CLIC5Q9NZA1 410 aa13.35□□□□□ -0.27
SS18-219ENST00000581570 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.35□□□□□ -0.27
SS18-219ENST00000581570 VPS37CA5D8V6 355 aaPredicted RBP13.34□□□□□ -0.27
SS18-219ENST00000581570 LRRIQ3A6PVS8 624 aaPredicted RBP13.34□□□□□ -0.27
SS18-219ENST00000581570 STX6O43752 255 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 EXOC3O60645 756 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 VNN1O95497 513 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 C7P10643 843 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 ACADVLP49748 655 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 CXADRP78310 365 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 ASIC1P78348 528 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 SGSM1Q2NKQ1 1148 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 TTC31Q49AM3 519 aaPredicted RBP13.34□□□□□ -0.27
SS18-219ENST00000581570 KIAA0895LQ68EN5 471 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 PCSK4Q6UW60 755 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 EID2Q8N6I1 236 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 PARD3BQ8TEW8 1205 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 TMEM176AQ96HP8 235 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 FBRSQ9HAH7 460 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 PRSS16Q9NQE7 514 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 NCKAP1Q9Y2A7 1128 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 UBE4BO95155 1302 aa13.34□□□□□ -0.27
SS18-219ENST00000581570 A0A1W2PPC4 97 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 SLC12A8A0AV02 714 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 FAM47DPA6NHR8 397 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 BRINP1O60477 761 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 KIF20AO95235 890 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 CD2BP2O95400 341 aaKnown RBP13.33□□□□□ -0.28
SS18-219ENST00000581570 ACTN2P35609 894 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 AMPD3Q01432 767 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 TLE3Q04726 772 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 CCDC173Q0VFZ6 552 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 MPPE1Q53F39 396 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 TAF1BQ53T94 588 aaPredicted RBP13.33□□□□□ -0.28
SS18-219ENST00000581570 FBXL19Q6PCT2 694 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 C12orf56Q8IXR9 622 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 SAP25Q8TEE9 199 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 WFIKKN2Q8TEU8 576 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 SLC6A18Q96N87 628 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 KBTBD4Q9NVX7 518 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 MARCH2Q9P0N8 246 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 CGNQ9P2M7 1197 aaKnown RBP13.33□□□□□ -0.28
SS18-219ENST00000581570 STRIP2Q9ULQ0 834 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 USP3Q9Y6I4 520 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 CABIN1Q9Y6J0 2220 aa13.33□□□□□ -0.28
SS18-219ENST00000581570 ERVH48-1M5A8F1 160 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 YKT6O15498 198 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 RPN1P04843 607 aaKnown RBP13.32□□□□□ -0.28
SS18-219ENST00000581570 IGHV4-34P06331 123 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 HLA-FP30511 346 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 CLDN10P78369 228 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 PDE4CQ08493 712 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 SHBQ15464 509 aa13.32□□□□□ -0.28
SS18-219ENST00000581570 ZNF776Q68DI1 518 aaPredicted RBP13.32□□□□□ -0.28
SS18-219ENST00000581570 SPOPLQ6IQ16 392 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms