RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 TRNP1Q6NT89 227 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 RFWD3Q6PCD5 774 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 CCDC33Q8N5R6 958 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 ALLCQ8N6M5 410 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 IL17RCQ8NAC3 791 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 ZNF397Q8NF99 534 aaPredicted RBP20.93■□□□□ 0.94
SS18-218ENST00000581021 PRICKLE1Q96MT3 831 aaPredicted RBP20.93■□□□□ 0.94
SS18-218ENST00000581021 HHIPQ96QV1 700 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 TRIM62Q9BVG3 475 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 PCDHGA2Q9Y5H1 932 aa20.93■□□□□ 0.94
SS18-218ENST00000581021 FRYLO94915 3013 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 TBC1D3BA6NDS4 549 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 ADAM23O75077 832 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 HOXD11P31277 338 aaPredicted RBP20.92■□□□□ 0.94
SS18-218ENST00000581021 TIE1P35590 1138 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 PBX1P40424 430 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 TNFRSF4P43489 277 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 DMC1Q14565 340 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 HEATR6Q6AI08 1181 aaKnown RBP20.92■□□□□ 0.94
SS18-218ENST00000581021 MMS22LQ6ZRQ5 1243 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 SYT13Q7L8C5 426 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 ALYREFQ86V81 257 aaKnown RBP20.92■□□□□ 0.94
SS18-218ENST00000581021 ERICH1Q86X53 443 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 SLC30A5Q8TAD4 765 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 C18orf8Q96DM3 657 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 XPO6Q96QU8 1125 aaKnown RBP20.92■□□□□ 0.94
SS18-218ENST00000581021 SYT11Q9BT88 431 aa20.92■□□□□ 0.94
SS18-218ENST00000581021 PRR23AA6NEV1 266 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 SGK1O00141 431 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 ACSL4O60488 711 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 ATG13O75143 517 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 CAVIN2O95810 425 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 MOCS2O96007 188 aaPredicted RBP20.91■□□□□ 0.94
SS18-218ENST00000581021 SERPINC1P01008 464 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 UNGP13051 313 aaPredicted RBP20.91■□□□□ 0.94
SS18-218ENST00000581021 MMP8P22894 467 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 HOXA6P31267 233 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 DGKGP49619 791 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 PTP4A2Q12974 167 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 SRSF5Q13243 272 aaKnown RBP20.91■□□□□ 0.94
SS18-218ENST00000581021 GEN1Q17RS7 908 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 FILIP1LQ4L180 1135 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 EGFLAMQ63HQ2 1017 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 RNF43Q68DV7 783 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 CACNA2D4Q7Z3S7 1137 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 IRF2BP2Q7Z5L9 587 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 NUCKS1Q9H1E3 243 aaKnown RBP20.91■□□□□ 0.94
SS18-218ENST00000581021 FAM204AQ9H8W3 233 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 MMP17Q9ULZ9 603 aa20.91■□□□□ 0.94
SS18-218ENST00000581021 SYNJ2BP-COX16A0A087WUM0 186 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 LRRC53A6NM62 1247 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 GOLGA8SH3BPF8 625 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 KLF8O95600 359 aaPredicted RBP20.9■□□□□ 0.94
SS18-218ENST00000581021 FLT3P36888 993 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 MRPS21P82921 87 aaKnown RBP20.9■□□□□ 0.94
SS18-218ENST00000581021 FAM102AQ5T9C2 384 aaPredicted RBP20.9■□□□□ 0.94
SS18-218ENST00000581021 PIK3R6Q5UE93 754 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 TMEM92Q6UXU6 159 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 PHLDB2Q86SQ0 1253 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 ZDHHC17Q8IUH5 632 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 UNC45BQ8IWX7 931 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 TXNDC5Q8NBS9 432 aaKnown RBP20.9■□□□□ 0.94
SS18-218ENST00000581021 WFDC5Q8TCV5 224 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 DDI1Q8WTU0 396 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 AZIN2Q96A70 460 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 ACDQ96AP0 544 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 ACOX2Q99424 681 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 FAM126AQ9BYI3 521 aaPredicted RBP20.9■□□□□ 0.94
SS18-218ENST00000581021 ANLNQ9NQW6 1124 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 DDIT4Q9NX09 232 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 COX16Q9P0S2 106 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 SLC27A6Q9Y2P4 619 aa20.9■□□□□ 0.94
SS18-218ENST00000581021 OTOGLQ3ZCN5 2332 aa20.89■□□□□ 0.94
SS18-218ENST00000581021 KCNU1A8MYU2 1149 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 I6L893 689 aaPredicted RBP20.89■□□□□ 0.93
SS18-218ENST00000581021 GJB6O95452 261 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 SCNN1AP37088 669 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 MATKP42679 507 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 SLC11A2P49281 568 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 RNASE9P60153 205 aaKnown RBP20.89■□□□□ 0.93
SS18-218ENST00000581021 CDK17Q00537 523 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 PPP2R5DQ14738 602 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 CLEC16AQ2KHT3 1053 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 MPPE1Q53F39 396 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 ZC3H14Q6PJT7 736 aaKnown RBP20.89■□□□□ 0.93
SS18-218ENST00000581021 TRIM72Q6ZMU5 477 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 SUMF1Q8NBK3 374 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 NKD2Q969F2 451 aaPredicted RBP20.89■□□□□ 0.93
SS18-218ENST00000581021 NPY6RQ99463 290 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 AGPAT1Q99943 283 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 C11orf70Q9BRQ4 267 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 TMEM59LQ9UK28 342 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 SLC8A2Q9UPR5 921 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 STARD13Q9Y3M8 1113 aa20.89■□□□□ 0.93
SS18-218ENST00000581021 RIF1Q5UIP0 2472 aaKnown RBP20.89■□□□□ 0.93
SS18-218ENST00000581021 HRO43593 1189 aa20.88■□□□□ 0.93
SS18-218ENST00000581021 CYBBP04839 570 aa20.88■□□□□ 0.93
SS18-218ENST00000581021 FERP16591 822 aa20.88■□□□□ 0.93
SS18-218ENST00000581021 NOS2P35228 1153 aa20.88■□□□□ 0.93
SS18-218ENST00000581021 SNX16P57768 344 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms