RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 DARS2Q6PI48 645 aaKnown RBP10.9□□□□□ -0.66
SS18-217ENST00000580958 B4GALNT4Q76KP1 1039 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 MON1AQ86VX9 555 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 UNC45BQ8IWX7 931 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 ARHGAP18Q8N392 663 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 MREGQ8N565 214 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 FBXO25Q8TCJ0 367 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 RNF139Q8WU17 664 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 P3H4Q92791 437 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 ART4Q93070 314 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 RNF34Q969K3 372 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 RNF166Q96A37 237 aaPredicted RBP10.9□□□□□ -0.66
SS18-217ENST00000580958 ZBTB9Q96C00 473 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 FMO2Q99518 471 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 TMEM121Q9BTD3 319 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 ZBED2Q9BTP6 218 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 TKTL2Q9H0I9 626 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 SMOC2Q9H3U7 446 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 AAASQ9NRG9 546 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 ETNK2Q9NVF9 386 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 COMMD8Q9NX08 183 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 CXXC1Q9P0U4 656 aaPredicted RBP10.9□□□□□ -0.66
SS18-217ENST00000580958 WHRNQ9P202 907 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 RCOR3Q9P2K3 495 aaPredicted RBP10.9□□□□□ -0.66
SS18-217ENST00000580958 AFF4Q9UHB7 1163 aaKnown RBP10.9□□□□□ -0.66
SS18-217ENST00000580958 SFMBT1Q9UHJ3 866 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 PCDHB12Q9Y5F1 795 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 PCDHGA4Q9Y5G9 962 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 HEY1Q9Y5J3 304 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 FAM92AA1XBS5 289 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 FAM72CH0Y354 149 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 MSI1O43347 362 aaKnown RBP10.89□□□□□ -0.67
SS18-217ENST00000580958 MAP3K6O95382 1288 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 SLC34A2O95436 690 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 IFNB1P01574 187 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 RARGP13631 454 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 ZFXP17010 805 aaPredicted RBP10.89□□□□□ -0.67
SS18-217ENST00000580958 ITIH2P19823 946 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 DNAJB2P25686 324 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 PPM1AP35813 382 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 ITGA8P53708 1063 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 GDF10P55107 478 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 GBE1Q04446 702 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 TAF10Q12962 218 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 CALCOCO2Q13137 446 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 SEMA3BQ13214 749 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 DPYSQ14117 519 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 FAM72AQ5TYM5 149 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 RASIP1Q5U651 963 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 IZUMO3Q5VZ72 239 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 NCBP2-AS2Q69YL0 99 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 FAM72DQ6L9T8 149 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 ZC3H18Q86VM9 953 aaKnown RBP10.89□□□□□ -0.67
SS18-217ENST00000580958 FAM72BQ86X60 149 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 VPS52Q8N1B4 723 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 CCDC89Q8N998 374 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 RSAD2Q8WXG1 361 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 ACBD3Q9H3P7 528 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 WDCPQ9H6R7 721 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 VIPAS39Q9H9C1 493 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 PCDH9Q9HC56 1237 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 ARHGEF4Q9NR80 690 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 FAM53CQ9NYF3 392 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 MTRF1LQ9UGC7 380 aaKnown RBP10.89□□□□□ -0.67
SS18-217ENST00000580958 ANAPC5Q9UJX4 755 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 NYNRINQ9P2P1 1898 aaKnown RBP10.89□□□□□ -0.67
SS18-217ENST00000580958 DOCK6Q96HP0 2047 aa10.89□□□□□ -0.67
SS18-217ENST00000580958 DNALI1O14645 258 aaPredicted RBP10.88□□□□□ -0.67
SS18-217ENST00000580958 MFSD11O43934 449 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 FGF18O76093 207 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 ABLIM3O94929 683 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 GGCXP38435 758 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 TUFMP49411 452 aaKnown RBP10.88□□□□□ -0.67
SS18-217ENST00000580958 TPI1P60174 286 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 DHX9Q08211 1270 aaKnown RBP10.88□□□□□ -0.67
SS18-217ENST00000580958 EFEMP1Q12805 493 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 SLC10A2Q12908 348 aaPredicted RBP10.88□□□□□ -0.67
SS18-217ENST00000580958 GPS1Q13098 491 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 EIF4EBP2Q13542 120 aaPredicted RBP10.88□□□□□ -0.67
SS18-217ENST00000580958 RAB33AQ14088 237 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 P3H1Q32P28 736 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 BRMS1LQ5PSV4 323 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 TPGS2Q68CL5 300 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 RFX8Q6ZV50 586 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 HERC6Q8IVU3 1022 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 BBOF1Q8ND07 529 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 CCHCR1Q8TD31 782 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 LRRN4Q8WUT4 740 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 HERVK_113Q902F9 699 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 LRRC45Q96CN5 670 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 TTLL2Q9BWV7 592 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 TXLNGYQ9BZA5 131 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 FAM129AQ9BZQ8 928 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 ZBP1Q9H171 429 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 PRDM16Q9HAZ2 1276 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 CYP4F11Q9HBI6 524 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 TLR8Q9NR97 1041 aaKnown RBP10.88□□□□□ -0.67
SS18-217ENST00000580958 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.88□□□□□ -0.67
SS18-217ENST00000580958 ARHGEF38Q9NXL2 777 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 ZMYND8Q9ULU4 1186 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms