RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ZNF18P17022 549 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 NCAPHQ15003 741 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 EIF4HQ15056 248 aaKnown RBP15.44■□□□□ 0.06
SS18-212ENST00000579061 LPAL2Q16609 132 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 USP39Q53GS9 565 aaKnown RBP15.44■□□□□ 0.06
SS18-212ENST00000579061 EGFLAMQ63HQ2 1017 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 RNF43Q68DV7 783 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 SDE2Q6IQ49 451 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 ANO7Q6IWH7 933 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 ANKS1BQ7Z6G8 1248 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 PASD1Q8IV76 773 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 FAM160A2Q8N612 972 aaPredicted RBP15.44■□□□□ 0.06
SS18-212ENST00000579061 ZNF557Q8N988 423 aaPredicted RBP15.44■□□□□ 0.06
SS18-212ENST00000579061 TMEM35BQ8NCS4 154 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 C1orf131Q8NDD1 294 aaKnown RBP15.44■□□□□ 0.06
SS18-212ENST00000579061 MDGA1Q8NFP4 955 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 IPO4Q8TEX9 1081 aaKnown RBP15.44■□□□□ 0.06
SS18-212ENST00000579061 UCMAQ8WVF2 138 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 TMA16Q96EY4 203 aaKnown RBP15.44■□□□□ 0.06
SS18-212ENST00000579061 FCRL2Q96LA5 508 aaPredicted RBP15.44■□□□□ 0.06
SS18-212ENST00000579061 GABRG3Q99928 467 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 BPIFA3Q9BQP9 254 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 TJP2Q9UDY2 1190 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 ABCA7Q8IZY2 2146 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 THADAQ6YHU6 1953 aa15.44■□□□□ 0.06
SS18-212ENST00000579061 LGALS16A8MUM7 142 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 TIMM44O43615 452 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 HSF2BPO75031 334 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 TRUB2O95900 331 aaKnown RBP15.43■□□□□ 0.06
SS18-212ENST00000579061 IGLV3-25P01717 112 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 HOXB2P14652 356 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 CDK11BP21127 795 aaKnown RBP15.43■□□□□ 0.06
SS18-212ENST00000579061 TGM1P22735 817 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 HOXD9P28356 352 aaPredicted RBP15.43■□□□□ 0.06
SS18-212ENST00000579061 EIF4EBP2Q13542 120 aaPredicted RBP15.43■□□□□ 0.06
SS18-212ENST00000579061 PIK3R6Q5UE93 754 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 SYPL2Q5VXT5 272 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 TAC4Q86UU9 113 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 KBTBD6Q86V97 674 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 ZNF677Q86XU0 584 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 ZDHHC17Q8IUH5 632 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 KIAA2013Q8IYS2 634 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 ZNF397Q8NF99 534 aaPredicted RBP15.43■□□□□ 0.06
SS18-212ENST00000579061 OLIG1Q8TAK6 271 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 DDX1Q92499 740 aaKnown RBP15.43■□□□□ 0.06
SS18-212ENST00000579061 SLC2A13Q96QE2 648 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 PDCL3Q9H2J4 239 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 ZDHHC4Q9NPG8 344 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 SIK3Q9Y2K2 1263 aa15.43■□□□□ 0.06
SS18-212ENST00000579061 TSPAN3O60637 253 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 RHOBTB1O94844 696 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 LSM8O95777 96 aaKnown RBP15.42■□□□□ 0.06
SS18-212ENST00000579061 GBP1P32455 592 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 SCNN1AP37088 669 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 GABRB2P47870 512 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 CDK17Q00537 523 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 SLC6A3Q01959 620 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 ENPP2Q13822 863 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 BYSLQ13895 437 aaKnown RBP15.42■□□□□ 0.06
SS18-212ENST00000579061 GEN1Q17RS7 908 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 PLK5Q496M5 336 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 PTPN20Q4JDL3 420 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 FAM133BQ5BKY9 247 aaKnown RBP15.42■□□□□ 0.06
SS18-212ENST00000579061 OR6B2Q6IFH4 312 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 OLFML1Q6UWY5 402 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 FAM183BPQ6ZVS7 135 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 SLC26A9Q7LBE3 791 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 APTXQ7Z2E3 356 aaKnown RBP15.42■□□□□ 0.06
SS18-212ENST00000579061 KIAA0907Q7Z7F0 614 aaPredicted RBP15.42■□□□□ 0.06
SS18-212ENST00000579061 CHPFQ8IZ52 775 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.42■□□□□ 0.06
SS18-212ENST00000579061 EPS8L1Q8TE68 723 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 WFIKKN2Q8TEU8 576 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 ERGIC2Q96RQ1 377 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 HSD3B7Q9H2F3 369 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 SYNCQ9H7C4 482 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.42■□□□□ 0.06
SS18-212ENST00000579061 ELOVL2Q9NXB9 296 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 THAP10Q9P2Z0 257 aaPredicted RBP15.42■□□□□ 0.06
SS18-212ENST00000579061 CLEC4EQ9ULY5 219 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 PCDHGA5Q9Y5G8 931 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 CKAP5Q14008 2032 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 NUP205Q92621 2012 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 CEP250Q9BV73 2442 aa15.42■□□□□ 0.06
SS18-212ENST00000579061 DMXL1Q9Y485 3027 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 TCRBV21S2A2A0A5A6 115 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 TYW5A2RUC4 315 aaKnown RBP15.41■□□□□ 0.06
SS18-212ENST00000579061 ZBTB24O43167 697 aaPredicted RBP15.41■□□□□ 0.06
SS18-212ENST00000579061 FOXD2O60548 495 aaPredicted RBP15.41■□□□□ 0.06
SS18-212ENST00000579061 EPN2O95208 641 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 APOEP02649 317 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 ERBB2P04626 1255 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 SLC2A3P11169 496 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 SLC6A4P31645 630 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 JAM2P57087 298 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 POLR2FP61218 127 aaKnown RBP15.41■□□□□ 0.06
SS18-212ENST00000579061 MTA1Q13330 715 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 SYCP1Q15431 976 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 ELF2Q15723 593 aa15.41■□□□□ 0.06
SS18-212ENST00000579061 ANO6Q4KMQ2 910 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms