RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 INPP5DQ92835 1189 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 TTC17Q96AE7 1141 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 FAM149B1Q96BN6 582 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 MTBPQ96DY7 904 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 SPATA13Q96N96 652 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 RAB3IPQ96QF0 476 aaPredicted RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 TRIM55Q9BYV6 548 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 UGT1A7Q9HAW7 530 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 UGT1A10Q9HAW8 530 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 UGT1A8Q9HAW9 530 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 HAO1Q9UJM8 370 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 STK38LQ9Y2H1 464 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 ARIH1Q9Y4X5 557 aaPredicted RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 PCDHA11Q9Y5I1 949 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 MAD1L1Q9Y6D9 718 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 C17orf102A2RUQ5 167 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 CLDN5O00501 218 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 CYB561D2O14569 222 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 PTGESO14684 152 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 GABRDO14764 452 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 KLF11O14901 512 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 KRT38O76015 456 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 MLNP12872 115 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 FDFT1P37268 417 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 CCNFP41002 786 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 PITX1P78337 314 aaPredicted RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 SARNPP82979 210 aaKnown RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 CDK16Q00536 496 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 TAF1BQ53T94 588 aaPredicted RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 HACE1Q8IYU2 909 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 UTP4Q969X6 686 aaKnown RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 OXNAD1Q96HP4 312 aaPredicted RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 TMEM237Q96Q45 408 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 PPP1R10Q96QC0 940 aaKnown RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 NPY6RQ99463 290 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 LGMNQ99538 433 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 TRIM56Q9BRZ2 755 aaKnown RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 IQCGQ9H095 443 aaKnown RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 MKS1Q9NXB0 559 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 MOCS1Q9NZB8 636 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 KIAA1522Q9P206 1035 aaPredicted RBP10.41□□□□□ -0.74
VPS53-220ENST00000576149 DCTN4Q9UJW0 460 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 PLLPQ9Y342 182 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 NR2E3Q9Y5X4 410 aa10.41□□□□□ -0.74
VPS53-220ENST00000576149 A8MUI8 341 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 MFSD11O43934 449 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 BGNP21810 368 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 ACAT1P24752 427 aaKnown RBP10.4□□□□□ -0.74
VPS53-220ENST00000576149 HOXC8P31273 242 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 NDUFV1P49821 464 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 BEX3Q00994 111 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 WSCD1Q658N2 575 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 TWF2Q6IBS0 349 aaKnown RBP10.4□□□□□ -0.74
VPS53-220ENST00000576149 CLEC20AQ6ZU45 233 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 DENND5BQ6ZUT9 1274 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 CLNKQ7Z7G1 428 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 MTDHQ86UE4 582 aaKnown RBP10.4□□□□□ -0.74
VPS53-220ENST00000576149 C2orf69Q8N8R5 385 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 AGAP11Q8TF27 550 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 RNF139Q8WU17 664 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 SLC7A6OSQ96CW6 309 aaPredicted RBP10.4□□□□□ -0.74
VPS53-220ENST00000576149 SLC2A13Q96QE2 648 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 KCNK13Q9HB14 408 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 LRRC4Q9HBW1 653 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 SAR1AQ9NR31 198 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 ZFP69BQ9UJL9 534 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 NUMBLQ9Y6R0 609 aa10.4□□□□□ -0.74
VPS53-220ENST00000576149 SF3B1O75533 1304 aaKnown RBP eCLIP10.4□□□□□ -0.751e-10■■■■■ 107
VPS53-220ENST00000576149 HMX2A2RU54 273 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 H3BRJ5 948 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 TRAFD1O14545 582 aaPredicted RBP10.39□□□□□ -0.75
VPS53-220ENST00000576149 CREB3O43889 395 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 NEFHP12036 1026 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 EZRP15311 586 aaKnown RBP10.39□□□□□ -0.75
VPS53-220ENST00000576149 GLUD2P49448 558 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 BMPR2Q13873 1038 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 E2F5Q15329 346 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 CCL14Q16627 93 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 CTC1Q2NKJ3 1217 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 KIAA0319Q5VV43 1072 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 SYPL2Q5VXT5 272 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 STEAP4Q687X5 459 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 COLGALT1Q8NBJ5 622 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 TBC1D31Q96DN5 1066 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 STAMBPL1Q96FJ0 436 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 P2RY11Q96G91 374 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 ZFP42Q96MM3 310 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 KATNAL1Q9BW62 490 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 AP5M1Q9H0R1 490 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 TMPRSS4Q9NRS4 437 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 STAP1Q9ULZ2 295 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 Q9Y3F1 56 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 A0A0G2JND7 137 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 M0QYT0 321 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 OPHN1O60890 802 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 ALDH1A2O94788 518 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 CBX6O95503 412 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 DLDP09622 509 aaKnown RBP10.39□□□□□ -0.75
VPS53-220ENST00000576149 GNAT1P11488 350 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 IGFBP6P24592 240 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms