RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 MAMDC2Q7Z304 686 aaPredicted RBP17.1■□□□□ 0.33
VPS53-218ENST00000575207 ANKS1BQ7Z6G8 1248 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 ZC3H18Q86VM9 953 aaKnown RBP17.1■□□□□ 0.33
VPS53-218ENST00000575207 CCDC83Q8IWF9 413 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 SORCS1Q8WY21 1168 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 SERAC1Q96JX3 654 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 MSTO1Q9BUK6 570 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 CHORDC1Q9UHD1 332 aaPredicted RBP17.1■□□□□ 0.33
VPS53-218ENST00000575207 CDH9Q9ULB4 789 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 KIAA1024Q9UPX6 916 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 HNRNPDLO14979 420 aaKnown RBP17.09■□□□□ 0.33
VPS53-218ENST00000575207 MTSS1O43312 755 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 TIMM44O43615 452 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 ZDHHC11BP0C7U3 371 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 LIPCP11150 499 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 WT1P19544 449 aaPredicted RBP17.09■□□□□ 0.33
VPS53-218ENST00000575207 DGKAP23743 735 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 TRAPPC10P48553 1259 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 CCR5P51681 352 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 POLE2P56282 527 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 PSMC1P62191 440 aaKnown RBP17.09■□□□□ 0.33
VPS53-218ENST00000575207 CYP27A1Q02318 531 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 TMEM215Q68D42 235 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 BORAQ6PGQ7 559 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 CPLX2Q6PUV4 134 aaKnown RBP17.09■□□□□ 0.33
VPS53-218ENST00000575207 GOLGA1Q92805 767 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 FBXO32Q969P5 355 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 MOCOSQ96EN8 888 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 PCED1BQ96HM7 432 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 APOLD1Q96LR9 279 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 JAKMIP1Q96N16 626 aaKnown RBP17.09■□□□□ 0.33
VPS53-218ENST00000575207 TIPINQ9BVW5 301 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 KLF16Q9BXK1 252 aaPredicted RBP17.09■□□□□ 0.33
VPS53-218ENST00000575207 NCKAP1Q9Y2A7 1128 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 CSMD2Q7Z408 3487 aa17.09■□□□□ 0.33
VPS53-218ENST00000575207 CCDC187A0A096LP49 1063 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 OR52Z1P0C646 297 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 LMO2P25791 158 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 CCT6AP40227 531 aaKnown RBP17.08■□□□□ 0.32
VPS53-218ENST00000575207 POU5F1Q01860 360 aaKnown RBP17.08■□□□□ 0.32
VPS53-218ENST00000575207 IFRD2Q12894 506 aaPredicted RBP17.08■□□□□ 0.32
VPS53-218ENST00000575207 SOWAHAQ2M3V2 549 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 MANEAQ5SRI9 462 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 FYB2Q5VWT5 728 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 RBM44Q6ZP01 1051 aaKnown RBP17.08■□□□□ 0.32
VPS53-218ENST00000575207 IQCHQ86VS3 1027 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 NT5DC4Q86YG4 428 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 NUP93Q8N1F7 819 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 CIPCQ9C0C6 399 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 PRSS16Q9NQE7 514 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 DDX19AQ9NUU7 478 aaKnown RBP17.08■□□□□ 0.32
VPS53-218ENST00000575207 TMEM30AQ9NV96 361 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 LSM7Q9UK45 103 aaKnown RBP17.08■□□□□ 0.32
VPS53-218ENST00000575207 TPX2Q9ULW0 747 aaKnown RBP17.08■□□□□ 0.32
VPS53-218ENST00000575207 SCML1Q9UN30 329 aa17.08■□□□□ 0.32
VPS53-218ENST00000575207 LRRC72A6NJI9 287 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 MAGEC1O60732 1142 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 RTN2O75298 545 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 TCEA3O75764 348 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 RTN3O95197 1032 aaPredicted RBP17.07■□□□□ 0.32
VPS53-218ENST00000575207 RPS6KB1P23443 525 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 GUCY2CP25092 1073 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 POLR2BP30876 1174 aaKnown RBP17.07■□□□□ 0.32
VPS53-218ENST00000575207 UQCRFS1P47985 274 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 ACOT2P49753 483 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 CACNA2D1P54289 1103 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 OVGP1Q12889 678 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 CAPRIN2Q6IMN6 1127 aaKnown RBP17.07■□□□□ 0.32
VPS53-218ENST00000575207 RSRC2Q7L4I2 434 aaKnown RBP17.07■□□□□ 0.32
VPS53-218ENST00000575207 LIMS2Q7Z4I7 341 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 LRRC52Q8N7C0 313 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 RDH13Q8NBN7 331 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 OR2T34Q8NGX1 318 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 MYCBPAPQ8TBZ2 947 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 IFI44Q8TCB0 444 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 NACA2Q9H009 215 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 EVA1BQ9NVM1 165 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 UCKL1Q9NWZ5 548 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 SEPT10Q9P0V9 454 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 AGAP1Q9UPQ3 857 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 SNX9Q9Y5X1 595 aa17.07■□□□□ 0.32
VPS53-218ENST00000575207 A0A087X0B3 334 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 H0YCG3 227 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 CENPBP07199 599 aaPredicted RBP17.06■□□□□ 0.32
VPS53-218ENST00000575207 KRT2P35908 639 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 ZNF776Q68DI1 518 aaPredicted RBP17.06■□□□□ 0.32
VPS53-218ENST00000575207 Q6ZNB5 142 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 DPH6Q7L8W6 267 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 CXorf38Q8TB03 319 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 KBTBD7Q8WVZ9 684 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 PABPC3Q9H361 631 aaKnown RBP17.06■□□□□ 0.32
VPS53-218ENST00000575207 FBXL12Q9NXK8 326 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 IL37Q9NZH6 218 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 MED13LQ71F56 2210 aa17.06■□□□□ 0.32
VPS53-218ENST00000575207 E9PMD0 336 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 FFAR2O15552 330 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 SEMA7AO75326 666 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 DDAH2O95865 285 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 NCKAP1LP55160 1127 aa17.05■□□□□ 0.32
VPS53-218ENST00000575207 NAPEPLDQ6IQ20 393 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms