RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 HACD1B0YJ81 288 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 RECQL4O94761 1208 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 PTDSS1P48651 473 aaKnown RBP23.5■■□□□ 1.35
VPS53-211ENST00000571805 CCNA1P78396 465 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 FBXO47Q5MNV8 452 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 ZNF467Q7Z7K2 595 aaPredicted RBP23.5■■□□□ 1.35
VPS53-211ENST00000571805 HSFY1Q96LI6 401 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 FAM49AQ9H0Q0 323 aaPredicted RBP23.5■■□□□ 1.35
VPS53-211ENST00000571805 FZD10Q9ULW2 581 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 TOP3BO95985 862 aaKnown RBP23.5■■□□□ 1.35
VPS53-211ENST00000571805 MLNP12872 115 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 ACADSBP45954 432 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 SARNPP82979 210 aaKnown RBP23.5■■□□□ 1.35
VPS53-211ENST00000571805 DUSP28Q4G0W2 176 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 SLC2A14Q8TDB8 520 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 MORF4L1Q9UBU8 362 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 UBQLN1Q9UMX0 589 aaKnown RBP23.5■■□□□ 1.35
VPS53-211ENST00000571805 MYO18AQ92614 2054 aaKnown RBP23.49■■□□□ 1.35
VPS53-211ENST00000571805 KPNA7A9QM74 516 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 GSRP00390 522 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 AKAP5P24588 427 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 CNTFP26441 200 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 FDFT1P37268 417 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 MATKP42679 507 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 NOTUMQ6P988 496 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 TREML1Q86YW5 311 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 MMADHCQ9H3L0 296 aaPredicted RBP23.49■■□□□ 1.35
VPS53-211ENST00000571805 GDAP2Q9NXN4 497 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 MARK2Q7KZI7 788 aaKnown RBP23.49■■□□□ 1.35
VPS53-211ENST00000571805 LIMS2Q7Z4I7 341 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 FAM131BQ86XD5 332 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 COLGALT1Q8NBJ5 622 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 CFAP61Q8NHU2 1237 aa23.49■■□□□ 1.35
VPS53-211ENST00000571805 RCOR3Q9P2K3 495 aaPredicted RBP23.49■■□□□ 1.35
VPS53-211ENST00000571805 F5H423 210 aaPredicted RBP23.48■■□□□ 1.35
VPS53-211ENST00000571805 ARL4AP40617 200 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 CRADDP78560 199 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 NIPAL4Q0D2K0 466 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 KPNB1Q14974 876 aaKnown RBP23.48■■□□□ 1.35
VPS53-211ENST00000571805 SLC25A52Q3SY17 297 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 ACSBG2Q5FVE4 666 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 LRRC8BQ6P9F7 803 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 DEFB106AQ8N104 65 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 GTF3C2Q8WUA4 911 aaPredicted RBP23.48■■□□□ 1.35
VPS53-211ENST00000571805 NDRG1Q92597 394 aaKnown RBP23.48■■□□□ 1.35
VPS53-211ENST00000571805 OSMRQ99650 979 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 ZNF638Q14966 1978 aaKnown RBP23.48■■□□□ 1.35
VPS53-211ENST00000571805 SMIM28A0A1B0GU29 152 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 DCAF8L1A6NGE4 600 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 SDR42E2A6NKP2 422 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 MFSD11O43934 449 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 CDC25CP30307 473 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 ABL2P42684 1182 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 AQP5P55064 265 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 DGKDQ16760 1214 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 EFHC1Q5JVL4 640 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 STXBP5Q5T5C0 1151 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 CRLF3Q8IUI8 442 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 HACE1Q8IYU2 909 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 TEX9Q8N6V9 391 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 PDCD7Q8N8D1 485 aaKnown RBP23.48■■□□□ 1.35
VPS53-211ENST00000571805 ARNTL2Q8WYA1 636 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 MCUR1Q96AQ8 359 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 APOL6Q9BWW8 343 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 SLC17A6Q9P2U8 582 aa23.48■■□□□ 1.35
VPS53-211ENST00000571805 HBS1LQ9Y450 684 aaKnown RBP23.48■■□□□ 1.35
VPS53-211ENST00000571805 RRN3P2A6NIE6 340 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 TKTP29401 623 aaKnown RBP23.47■■□□□ 1.35
VPS53-211ENST00000571805 LDLRAD1Q5T700 205 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 OTUD1Q5VV17 481 aaPredicted RBP23.47■■□□□ 1.35
VPS53-211ENST00000571805 OR6J1Q8NGC5 347 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 WWP1Q9H0M0 922 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 SNX25Q9H3E2 840 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 EMCNQ9ULC0 261 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 STRNO43815 780 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 CD4P01730 458 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 ALDOAP04075 364 aaKnown RBP23.47■■□□□ 1.35
VPS53-211ENST00000571805 KITP10721 976 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 GCKP35557 465 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 STX3Q13277 289 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 CMPK2Q5EBM0 449 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 KYAT3Q6YP21 454 aaKnown RBP23.47■■□□□ 1.35
VPS53-211ENST00000571805 NETO2Q8NC67 525 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 WDR60Q8WVS4 1066 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 EIF2B3Q9NR50 452 aaKnown RBP23.47■■□□□ 1.35
VPS53-211ENST00000571805 TMPRSS4Q9NRS4 437 aa23.47■■□□□ 1.35
VPS53-211ENST00000571805 SDAD1Q9NVU7 687 aaKnown RBP eCLIP23.47■■□□□ 1.351e-7■□□□□ 10.9
VPS53-211ENST00000571805 PPARGC1AQ9UBK2 798 aaKnown RBP23.47■■□□□ 1.35
VPS53-211ENST00000571805 MARCOQ9UEW3 520 aaPredicted RBP23.47■■□□□ 1.35
VPS53-211ENST00000571805 ADCY6O43306 1168 aa23.46■■□□□ 1.35
VPS53-211ENST00000571805 DARSP14868 501 aaKnown RBP23.46■■□□□ 1.35
VPS53-211ENST00000571805 SULT1E1P49888 294 aa23.46■■□□□ 1.35
VPS53-211ENST00000571805 PITX1P78337 314 aaPredicted RBP23.46■■□□□ 1.35
VPS53-211ENST00000571805 ZCCHC23Q6ZST2 131 aa23.46■■□□□ 1.35
VPS53-211ENST00000571805 PSTKQ8IV42 348 aaKnown RBP23.46■■□□□ 1.35
VPS53-211ENST00000571805 SMC1BQ8NDV3 1235 aa23.46■■□□□ 1.35
VPS53-211ENST00000571805 PPP1R13LQ8WUF5 828 aa23.46■■□□□ 1.35
VPS53-211ENST00000571805 P2RY11Q96G91 374 aa23.46■■□□□ 1.35
VPS53-211ENST00000571805 TRIM6Q9C030 488 aaPredicted RBP23.46■■□□□ 1.35
VPS53-211ENST00000571805 KLK14Q9P0G3 267 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms