RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TSSK4Q6SA08 328 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 TMTC1Q8IUR5 882 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 CCDC170Q8IYT3 715 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 EDEM1Q92611 657 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 ZFRQ96KR1 1074 aaKnown RBP21.45■■□□□ 1.02
VPS53-210ENST00000571456 SELENOOQ9BVL4 669 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 FAM126AQ9BYI3 521 aaPredicted RBP21.45■■□□□ 1.02
VPS53-210ENST00000571456 MRPL47Q9HD33 250 aaKnown RBP21.45■■□□□ 1.02
VPS53-210ENST00000571456 LTB4R2Q9NPC1 389 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 PARVAQ9NVD7 372 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.45■■□□□ 1.02
VPS53-210ENST00000571456 RAB23Q9ULC3 237 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 CCL26Q9Y258 94 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 SCINQ9Y6U3 715 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 F5P12259 2224 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 SIGLEC16A6NMB1 481 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 LATS1O95835 1130 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 TBX18O95935 607 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 F9P00740 461 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 PLEKP08567 350 aaPredicted RBP21.44■■□□□ 1.02
VPS53-210ENST00000571456 SLC2A3P11169 496 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 KRT3P12035 628 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 TRIP4Q15650 581 aaPredicted RBP21.44■■□□□ 1.02
VPS53-210ENST00000571456 ASTE1Q2TB18 679 aaPredicted RBP21.44■■□□□ 1.02
VPS53-210ENST00000571456 DCAF6Q58WW2 860 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 C1orf228Q6PIY5 440 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 HTR3DQ70Z44 454 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 MIB1Q86YT6 1006 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 UNC45BQ8IWX7 931 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 DEFB106AQ8N104 65 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 DQX1Q8TE96 717 aaKnown RBP21.44■■□□□ 1.02
VPS53-210ENST00000571456 OSCP1Q8WVF1 389 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 MSANTD3Q96H12 275 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 IRX2Q9BZI1 471 aaPredicted RBP21.44■■□□□ 1.02
VPS53-210ENST00000571456 BRD9Q9H8M2 597 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 NHEJ1Q9H9Q4 299 aaPredicted RBP21.44■■□□□ 1.02
VPS53-210ENST00000571456 LUC7LQ9NQ29 371 aaKnown RBP21.44■■□□□ 1.02
VPS53-210ENST00000571456 TMEM59LQ9UK28 342 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 TLR6Q9Y2C9 796 aa21.44■■□□□ 1.02
VPS53-210ENST00000571456 A0A087X0T9 212 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 LRP3O75074 770 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 FAM228BP0C875 321 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 HOXB3P14651 431 aaPredicted RBP21.43■■□□□ 1.02
VPS53-210ENST00000571456 HARS2P49590 506 aaKnown RBP21.43■■□□□ 1.02
VPS53-210ENST00000571456 CCDC122Q5T0U0 273 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 ACBD5Q5T8D3 534 aaPredicted RBP21.43■■□□□ 1.02
VPS53-210ENST00000571456 DNAJC24Q6P3W2 148 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 NT5C3BQ969T7 300 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 AZIN2Q96A70 460 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 CLDN23Q96B33 292 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 RSPRY1Q96DX4 576 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 PGAP3Q96FM1 320 aaPredicted RBP21.43■■□□□ 1.02
VPS53-210ENST00000571456 PIWIL1Q96J94 861 aaKnown RBP21.43■■□□□ 1.02
VPS53-210ENST00000571456 SMG9Q9H0W8 520 aaKnown RBP21.43■■□□□ 1.02
VPS53-210ENST00000571456 PRMT8Q9NR22 394 aaPredicted RBP21.43■■□□□ 1.02
VPS53-210ENST00000571456 SMPD4Q9NXE4 827 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 CFAP97Q9P2B7 532 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 NAALADL1Q9UQQ1 740 aa21.43■■□□□ 1.02
VPS53-210ENST00000571456 SPEGQ15772 3267 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 SLC12A8A0AV02 714 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 GOLGA8SH3BPF8 625 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 TRUB2O95900 331 aaKnown RBP21.42■■□□□ 1.02
VPS53-210ENST00000571456 IGLV3-25P01717 112 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 KCNA4P22459 653 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 GDI1P31150 447 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 CYLC1P35663 651 aaPredicted RBP21.42■■□□□ 1.02
VPS53-210ENST00000571456 IFNAR2P48551 515 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 AMPD2Q01433 879 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 SLC25A52Q3SY17 297 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 LAIR1Q6GTX8 287 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 PLEKHA7Q6IQ23 1121 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 ATP2A3Q93084 1043 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 FAM83CQ9BQN1 747 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 PLA2G2FQ9BZM2 168 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 TAS2R14Q9NYV8 317 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 LCMT1Q9UIC8 334 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 NUDT5Q9UKK9 219 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 NENFQ9UMX5 172 aa21.42■■□□□ 1.02
VPS53-210ENST00000571456 TCRBV5S1A1TA0A578 114 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 TMCO5BA8MYB1 307 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 STC2O76061 302 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 IPO7O95373 1038 aaKnown RBP21.41■■□□□ 1.02
VPS53-210ENST00000571456 NFATC1O95644 943 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 IGLV3-27P01718 113 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 CD72P21854 359 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 PMLP29590 882 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 SDC4P31431 198 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 PTPN9P43378 593 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 RPS9P46781 194 aaKnown RBP21.41■■□□□ 1.02
VPS53-210ENST00000571456 TBX4P57082 545 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 SHC2P98077 582 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 NR1H3Q13133 447 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 GSE1Q14687 1217 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 TAF5Q15542 800 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 LPAL2Q16609 132 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 SYPL2Q5VXT5 272 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 SND1Q7KZF4 910 aaKnown RBP eCLIP21.41■■□□□ 1.02
VPS53-210ENST00000571456 NELL2Q99435 816 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 NPY6RQ99463 290 aa21.41■■□□□ 1.02
VPS53-210ENST00000571456 CHP1Q99653 195 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms