RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CYP2F1P24903 491 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 ELF1P32519 619 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 HSPA9P38646 679 aaKnown RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 GLUD2P49448 558 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 EIF3EP60228 445 aaKnown RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 WDR5P61964 334 aaKnown RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 COG7P83436 770 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 ROR1Q01973 937 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 DSG1Q02413 1049 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 VEPH1Q14D04 833 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 MORF4L2Q15014 288 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 PDK1Q15118 436 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 NOMO1Q15155 1222 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 TAF5Q15542 800 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 OASLQ15646 514 aaKnown RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 SMTNL2Q2TAL5 461 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 ATP13A4Q4VNC1 1196 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 AADACL2Q6P093 401 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 MSANTD2Q6P1R3 559 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 TTC27Q6P3X3 843 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS39-213ENST00000570062 HOOK3Q86VS8 718 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 RELL1Q8IUW5 271 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 SCN4BQ8IWT1 228 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 RNF168Q8IYW5 571 aaPredicted RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 SLC39A11Q8N1S5 342 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 STKLD1Q8NE28 680 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 ZNF461Q8TAF7 563 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 SLC7A14Q8TBB6 771 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 DIS3LQ8TF46 1054 aaKnown RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 ART4Q93070 314 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 RNF34Q969K3 372 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 C1orf74Q96LT6 269 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 PPP1R2P1Q96PQ5 205 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 LPIN3Q9BQK8 851 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 CCDC77Q9BR77 488 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 SNRNP25Q9BV90 132 aaKnown RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 SMOC2Q9H3U7 446 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 CWH43Q9H720 699 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 CATSPERBQ9H7T0 1116 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 MRPL17Q9NRX2 175 aaKnown RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 DDIT4Q9NX09 232 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS39-213ENST00000570062 PAK5Q9P286 719 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 UXTQ9UBK9 157 aaPredicted RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 CACNG4Q9UBN1 327 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 ANAPC5Q9UJX4 755 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 TPX2Q9ULW0 747 aaKnown RBP8.26□□□□□ -1.09
VPS39-213ENST00000570062 NR2E1Q9Y466 385 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 ASB3Q9Y575 518 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 CLUHO75153 1309 aa8.26□□□□□ -1.09
VPS39-213ENST00000570062 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 TCRBV7S2A1N4TA0A589 114 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 MTMR11A4FU01 709 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 GOLGA8KD6RF30 607 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 SGK1O00141 431 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 AP3B1O00203 1094 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 EIF3HO15372 352 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS39-213ENST00000570062 FGF10O15520 208 aaPredicted RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 PPFIA2O75334 1257 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 ZMYND10O75800 440 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 CCNYL3P0C7X3 344 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 RBP3P10745 1247 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 BMP1P13497 986 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 CSF2RAP15509 400 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 TSHRP16473 764 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 ALDH1A3P47895 512 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 NDUFV1P49821 464 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 PLTPP55058 493 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 SH3BP2P78314 561 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 SARNPP82979 210 aaKnown RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 OTUD4Q01804 1114 aaKnown RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 NRG1Q02297 640 aaPredicted RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 FPGSQ05932 587 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 CBLBQ13191 982 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 NME3Q13232 169 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 SNX1Q13596 522 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 RAB33AQ14088 237 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 PSMD5Q16401 504 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 P3H1Q32P28 736 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 MGAT5BQ3V5L5 792 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 PABPC1LQ4VXU2 614 aaKnown RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 PPP6R3Q5H9R7 873 aaPredicted RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 SNX30Q5VWJ9 437 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 TRNP1Q6NT89 227 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 DARS2Q6PI48 645 aaKnown RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 KLHDC10Q6PID8 442 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 ELMSAN1Q6PJG2 1045 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 ITIH5Q86UX2 942 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 CPNE8Q86YQ8 564 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 UNC45BQ8IWX7 931 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 ZDHHC14Q8IZN3 488 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 FIBCD1Q8N539 461 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 PLD5Q8N7P1 536 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 ACTL9Q8TC94 416 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 CLEC4CQ8WTT0 213 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 RIN2Q8WYP3 895 aaPredicted RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 RTP4Q96DX8 246 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 PIWIL1Q96J94 861 aaKnown RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 TTC25Q96NG3 672 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms