RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 FOXR1Q6PIV2 292 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 TMC6Q7Z403 805 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 ARL14Q8N4G2 192 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 TOP6BLQ8N6T0 577 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 KCNB2Q92953 911 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 PCED1BQ96HM7 432 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 PDLIM2Q96JY6 352 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 PKNOX2Q96KN3 472 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 TIPINQ9BVW5 301 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 OSBPL2Q9H1P3 480 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 ELOVL2Q9NXB9 296 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 GDAP2Q9NXN4 497 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 ANAPC2Q9UJX6 822 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 CDH9Q9ULB4 789 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 AGAP1Q9UPQ3 857 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 PCDHGA4Q9Y5G9 962 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 ENTPD2Q9Y5L3 495 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 SNX9Q9Y5X1 595 aa11.84□□□□□ -0.51
CDH3-208ENST00000569036 EPB41L2O43491 1005 aaKnown RBP11.83□□□□□ -0.52
CDH3-208ENST00000569036 NOBOXO60393 691 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 AGFG2O95081 481 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 TNFSF15O95150 251 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 MBD3O95983 291 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 DNTTP04053 509 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 ITGB3P05106 788 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 GP1BAP07359 652 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 LMO2P25791 158 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 MLLT3P42568 568 aaPredicted RBP11.83□□□□□ -0.52
CDH3-208ENST00000569036 NCKAP1LP55160 1127 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 KCNJ12Q14500 433 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 E2F5Q15329 346 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 TGIF1Q15583 401 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 MAPRE1Q15691 268 aaKnown RBP11.83□□□□□ -0.52
CDH3-208ENST00000569036 SOWAHAQ2M3V2 549 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 TTC31Q49AM3 519 aaPredicted RBP11.83□□□□□ -0.52
CDH3-208ENST00000569036 NCEH1Q6PIU2 408 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 ANKS1BQ7Z6G8 1248 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 SLC25A45Q8N413 288 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 ZNF366Q8N895 744 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.83□□□□□ -0.52
CDH3-208ENST00000569036 OR4C6Q8NH72 309 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 KBTBD7Q8WVZ9 684 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 HTR3CQ8WXA8 447 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 MIB2Q96AX9 1013 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 PIWIL1Q96J94 861 aaKnown RBP11.83□□□□□ -0.52
CDH3-208ENST00000569036 LARP6Q9BRS8 491 aaKnown RBP11.83□□□□□ -0.52
CDH3-208ENST00000569036 CIPCQ9C0C6 399 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 NACA2Q9H009 215 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 ABCG4Q9H172 646 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 ADNPQ9H2P0 1102 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 BRMS1Q9HCU9 246 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 CHORDC1Q9UHD1 332 aaPredicted RBP11.83□□□□□ -0.52
CDH3-208ENST00000569036 KCNG1Q9UIX4 513 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 DNM3Q9UQ16 869 aa11.83□□□□□ -0.52
CDH3-208ENST00000569036 A1L4Q6 167 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 PENKP01210 267 aaPredicted RBP11.82□□□□□ -0.52
CDH3-208ENST00000569036 THEGLP0DJG4 465 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 DCTP40126 519 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 GALCP54803 685 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 CYP4F2P78329 520 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 EIF4HQ15056 248 aaKnown RBP11.82□□□□□ -0.52
CDH3-208ENST00000569036 TMEM215Q68D42 235 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 SRRM1Q8IYB3 904 aaKnown RBP11.82□□□□□ -0.52
CDH3-208ENST00000569036 LRRC52Q8N7C0 313 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 C1orf127Q8N9H9 656 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 MAPK15Q8TD08 544 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 KCNN1Q92952 543 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 GRAMD1AQ96CP6 724 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 ZNF274Q96GC6 653 aaPredicted RBP11.82□□□□□ -0.52
CDH3-208ENST00000569036 SERAC1Q96JX3 654 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 KLF16Q9BXK1 252 aaPredicted RBP11.82□□□□□ -0.52
CDH3-208ENST00000569036 LSM7Q9UK45 103 aaKnown RBP11.82□□□□□ -0.52
CDH3-208ENST00000569036 NOL7Q9UMY1 257 aaKnown RBP11.82□□□□□ -0.52
CDH3-208ENST00000569036 PCNX1Q96RV3 2341 aa11.82□□□□□ -0.52
CDH3-208ENST00000569036 RP1L1Q8IWN7 2480 aaPredicted RBP11.82□□□□□ -0.52
CDH3-208ENST00000569036 TDRD6O60522 2096 aaKnown RBP11.82□□□□□ -0.52
CDH3-208ENST00000569036 LY6G6EA0A0G2JKS1 128 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 C10orf142B7Z368 130 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 H0YCG3 227 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 FFAR2O15552 330 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 RTN2O75298 545 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 CDKL5O76039 1030 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 RTN3O95197 1032 aaPredicted RBP11.81□□□□□ -0.52
CDH3-208ENST00000569036 ITGA2BP08514 1039 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 ZDHHC11BP0C7U3 371 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 PLCG1P19174 1290 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 TGM2P21980 687 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 CD97P48960 835 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 MORC3Q14149 939 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 SLC45A4Q5BKX6 768 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 MDH1BQ5I0G3 518 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 FYB2Q5VWT5 728 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 KCNK18Q7Z418 384 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 NUP93Q8N1F7 819 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 WDR36Q8NI36 951 aaKnown RBP11.81□□□□□ -0.52
CDH3-208ENST00000569036 CXorf38Q8TB03 319 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 MYCBPAPQ8TBZ2 947 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 SNX29Q8TEQ0 813 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 TMEM245Q9H330 911 aa11.81□□□□□ -0.52
CDH3-208ENST00000569036 FBRSQ9HAH7 460 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms