RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 CBWD2Q8IUF1 395 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 SYCP3Q8IZU3 236 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 GPD1LQ8N335 351 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 TMC2Q8TDI7 906 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 RFFLQ8WZ73 363 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 LARP4BQ92615 738 aaKnown RBP12.37□□□□□ -0.43
CLK3-222ENST00000568232 ZNF578Q96N58 590 aaPredicted RBP12.37□□□□□ -0.43
CLK3-222ENST00000568232 SMOQ99835 787 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 NMUR1Q9HB89 426 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 DMAP1Q9NPF5 467 aaPredicted RBP12.37□□□□□ -0.43
CLK3-222ENST00000568232 CYLDQ9NQC7 956 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 TLR8Q9NR97 1041 aaKnown RBP12.37□□□□□ -0.43
CLK3-222ENST00000568232 A0A1W2PPC4 97 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 CYP26A1O43174 497 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 AP1G2O75843 785 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 STC2O76061 302 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 CKMT2P17540 419 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 EPHA8P29322 1005 aaPredicted RBP12.36□□□□□ -0.43
CLK3-222ENST00000568232 TNNC1P63316 161 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 ARID5AQ03989 594 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 NFATC3Q12968 1075 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 ARL6IP4Q66PJ3 421 aaKnown RBP12.36□□□□□ -0.43
CLK3-222ENST00000568232 KIAA0895LQ68EN5 471 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 MCTP1Q6DN14 999 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 GPRIN1Q7Z2K8 1008 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 CACTIN-AS1Q8N1I8 211 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 RASSF8Q8NHQ8 419 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 CYB5D2Q8WUJ1 264 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 SNRNP27Q8WVK2 155 aaKnown RBP12.36□□□□□ -0.43
CLK3-222ENST00000568232 KCNE4Q8WWG9 221 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 AK8Q96MA6 479 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 KRT82Q9NSB4 513 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 COMMD8Q9NX08 183 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 PCDHGA4Q9Y5G9 962 aa12.36□□□□□ -0.43
CLK3-222ENST00000568232 A0A1W2PQH9 124 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 SLC26A4O43511 780 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 DNTTP04053 509 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 HMBSP08397 361 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 NUDT7P0C024 238 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 RARGP13631 454 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 PLA2G4AP47712 749 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 MAP3K7CLP57077 242 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 GABREP78334 506 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 HMGN5P82970 282 aaKnown RBP12.35□□□□□ -0.43
CLK3-222ENST00000568232 NFKB2Q00653 900 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 ILKQ13418 452 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 FNDC3BQ53EP0 1204 aaKnown RBP12.35□□□□□ -0.43
CLK3-222ENST00000568232 RILPL1Q5EBL4 403 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 C10orf120Q5SQS8 335 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 FUKQ8N0W3 1084 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 ELMO3Q96BJ8 720 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 SMARCD1Q96GM5 515 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 TMEM245Q9H330 911 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 SGK2Q9HBY8 427 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 PRSS16Q9NQE7 514 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 AASDHPPTQ9NRN7 309 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 ADAMTS1Q9UHI8 967 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 LIMCH1Q9UPQ0 1083 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 ATP8B3O60423 1300 aa12.35□□□□□ -0.43
CLK3-222ENST00000568232 FLNCQ14315 2725 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 CKAP5Q14008 2032 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 A0A1W2PR77 199 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 ZNF233A6NK53 670 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 NTRK1P04629 796 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 FAM163BP0C2L3 166 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 DLATP10515 647 aaKnown RBP12.34□□□□□ -0.43
CLK3-222ENST00000568232 CCDC130P13994 396 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 CD38P28907 300 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 MYL6P60660 151 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 KCNJ12Q14500 433 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 EIF4HQ15056 248 aaKnown RBP12.34□□□□□ -0.43
CLK3-222ENST00000568232 C6orf132Q5T0Z8 1188 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 SFMBT2Q5VUG0 894 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 KANSL1Q7Z3B3 1105 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 WDR49Q8IV35 697 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 EXD3Q8N9H8 876 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 RDH13Q8NBN7 331 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 JAKMIP2Q96AA8 810 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 FAM117AQ9C073 453 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 MTG2Q9H4K7 406 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 FBXO44Q9H4M3 255 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 SMYD3Q9H7B4 428 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 GDF3Q9NR23 364 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLK3-222ENST00000568232 SERGEFQ9UGK8 458 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 AGO1Q9UL18 857 aaKnown RBP12.34□□□□□ -0.43
CLK3-222ENST00000568232 HEMK1Q9Y5R4 338 aaPredicted RBP12.34□□□□□ -0.43
CLK3-222ENST00000568232 PLXNA2O75051 1894 aa12.34□□□□□ -0.43
CLK3-222ENST00000568232 K7ENP7 123 aa12.33□□□□□ -0.44
CLK3-222ENST00000568232 TERTO14746 1132 aaKnown RBP12.33□□□□□ -0.44
CLK3-222ENST00000568232 TIMM44O43615 452 aa12.33□□□□□ -0.44
CLK3-222ENST00000568232 USP12O75317 370 aa12.33□□□□□ -0.44
CLK3-222ENST00000568232 TNNI1P19237 187 aa12.33□□□□□ -0.44
CLK3-222ENST00000568232 ACP1P24666 158 aa12.33□□□□□ -0.44
CLK3-222ENST00000568232 CHKAP35790 457 aa12.33□□□□□ -0.44
CLK3-222ENST00000568232 ARRB1P49407 418 aaPredicted RBP12.33□□□□□ -0.44
CLK3-222ENST00000568232 GALCP54803 685 aa12.33□□□□□ -0.44
CLK3-222ENST00000568232 SURF1Q15526 300 aa12.33□□□□□ -0.44
CLK3-222ENST00000568232 PROX2Q3B8N5 592 aa12.33□□□□□ -0.44
CLK3-222ENST00000568232 INO80CQ6PI98 192 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms