RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SIGLEC10Q96LC7 697 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 PITPNM3Q9BZ71 974 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 C12orf65Q9H3J6 166 aaKnown RBP20.96■□□□□ 0.95
CLN3-230ENST00000568076 SLC12A4Q9UP95 1085 aa20.96■□□□□ 0.95
CLN3-230ENST00000568076 CEP350Q5VT06 3117 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 CXorf49A8MYA2 514 aaPredicted RBP20.95■□□□□ 0.94
CLN3-230ENST00000568076 FAM72CH0Y354 149 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 H0YHG0 523 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 H3BRJ5 948 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 ZNF623O75123 536 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 FAM155BO75949 473 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 ZWINTO95229 277 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 POMCP01189 267 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 IBSPP21815 317 aaPredicted RBP20.95■□□□□ 0.94
CLN3-230ENST00000568076 CCND3P30281 292 aaPredicted RBP20.95■□□□□ 0.94
CLN3-230ENST00000568076 DSC3Q14574 896 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 PRKD1Q15139 912 aaPredicted RBP20.95■□□□□ 0.94
CLN3-230ENST00000568076 PAN2Q504Q3 1202 aaKnown RBP20.95■□□□□ 0.94
CLN3-230ENST00000568076 FAM72AQ5TYM5 149 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 CCSAPQ6IQ19 270 aaPredicted RBP20.95■□□□□ 0.94
CLN3-230ENST00000568076 FAM72DQ6L9T8 149 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 CD300LGQ6UXG3 332 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 FAM72BQ86X60 149 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 TP53INP2Q8IXH6 220 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 TCP10LQ8TDR4 215 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 SLCO1B3Q9NPD5 702 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 CNGB3Q9NQW8 809 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 SMYD2Q9NRG4 433 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 ARL2BPQ9Y2Y0 163 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 PTCH2Q9Y6C5 1203 aa20.95■□□□□ 0.94
CLN3-230ENST00000568076 ZNF638Q14966 1978 aaKnown RBP20.95■□□□□ 0.94
CLN3-230ENST00000568076 A0A0A0MRY4 1105 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 C9IYK1 514 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 PRKCHP24723 683 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 ADRA1DP25100 572 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 ADRA1BP35368 520 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 MGAT5Q09328 741 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 UNC5AQ6ZN44 842 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 SH2D5Q6ZV89 423 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 KLHDC9Q8NEP7 349 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 LRRC39Q96DD0 335 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 SPATA13Q96N96 652 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.94■□□□□ 0.94
CLN3-230ENST00000568076 SLC17A7Q9P2U7 560 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 IQANK1A0A1B0GTG1 560 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 F5H423 210 aaPredicted RBP20.94■□□□□ 0.94
CLN3-230ENST00000568076 CAPN9O14815 690 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 DCLK1O15075 740 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 INHBAP08476 426 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 GBP2P32456 591 aaPredicted RBP20.94■□□□□ 0.94
CLN3-230ENST00000568076 BRCC3P46736 316 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 LPIN1Q14693 890 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 HHATQ5VTY9 493 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 RFX8Q6ZV50 586 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 BZW1Q7L1Q6 419 aaKnown RBP20.94■□□□□ 0.94
CLN3-230ENST00000568076 ZNF276Q8N554 614 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 MYLPFQ96A32 169 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 P2RY11Q96G91 374 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 RMDN2Q96LZ7 410 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 PRDM16Q9HAZ2 1276 aa20.94■□□□□ 0.94
CLN3-230ENST00000568076 A0A0U1RQF3 1178 aa20.93■□□□□ 0.94
CLN3-230ENST00000568076 MT-ND3P03897 115 aa20.93■□□□□ 0.94
CLN3-230ENST00000568076 NCAM1P13591 858 aa20.93■□□□□ 0.94
CLN3-230ENST00000568076 PAFAH1B3Q15102 231 aaKnown RBP20.93■□□□□ 0.94
CLN3-230ENST00000568076 FAM133BQ5BKY9 247 aaKnown RBP20.93■□□□□ 0.94
CLN3-230ENST00000568076 SLC26A11Q86WA9 606 aa20.93■□□□□ 0.94
CLN3-230ENST00000568076 ALKBH8Q96BT7 664 aaKnown RBP20.93■□□□□ 0.94
CLN3-230ENST00000568076 GRAMD1AQ96CP6 724 aa20.93■□□□□ 0.94
CLN3-230ENST00000568076 SLC9A7Q96T83 725 aa20.93■□□□□ 0.94
CLN3-230ENST00000568076 EBNA1BP2Q99848 306 aaKnown RBP20.93■□□□□ 0.94
CLN3-230ENST00000568076 CSNK1G1Q9HCP0 422 aa20.93■□□□□ 0.94
CLN3-230ENST00000568076 PHTF1Q9UMS5 762 aa20.93■□□□□ 0.94
CLN3-230ENST00000568076 IKBKGQ9Y6K9 419 aa20.93■□□□□ 0.94
CLN3-230ENST00000568076 SF3B1O75533 1304 aaKnown RBP eCLIP20.93■□□□□ 0.943e-9■■■■■ 164.7
CLN3-230ENST00000568076 EEF2KO00418 725 aaKnown RBP20.92■□□□□ 0.94
CLN3-230ENST00000568076 B3GAT3O94766 335 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 APOEP02649 317 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 LTFP02788 710 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 PCSK1P29120 753 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 AP1B1Q10567 949 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 SEMA3BQ13214 749 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 PPM1NQ8N819 430 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 HASPINQ8TF76 798 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 NTAN1Q96AB6 310 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 SMARCD1Q96GM5 515 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 CEP41Q9BYV8 373 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 PRDM12Q9H4Q4 367 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 TMLHEQ9NVH6 421 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 STARD13Q9Y3M8 1113 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 RNF103O00237 685 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 TRDMT1O14717 391 aaKnown RBP20.92■□□□□ 0.94
CLN3-230ENST00000568076 EDF1O60869 148 aaKnown RBP20.92■□□□□ 0.94
CLN3-230ENST00000568076 UBOX5O94941 541 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 GSTA1P08263 222 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 ODC1P11926 461 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 GLUD2P49448 558 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 RAB27AP51159 221 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 SLC18A2Q05940 514 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 SCAPQ12770 1279 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 GALNTL6Q49A17 601 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms