RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 FAM133BQ5BKY9 247 aaKnown RBP20.32■□□□□ 0.84
CLN3-225ENST00000566824 DNAJC24Q6P3W2 148 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 RFWD3Q6PCD5 774 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 ZNF852Q6ZMS4 543 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 ARCQ7LC44 396 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 CNGA4Q8IV77 575 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 SFTPA1Q8IWL2 248 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 NAT16Q8N8M0 369 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 TMEM105Q8N8V8 129 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 EZH1Q92800 747 aaPredicted RBP20.32■□□□□ 0.84
CLN3-225ENST00000566824 SELENOOQ9BVL4 669 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 PLK2Q9NYY3 685 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 STOML2Q9UJZ1 356 aa20.32■□□□□ 0.84
CLN3-225ENST00000566824 FAM170BA6NMN3 283 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 KCNU1A8MYU2 1149 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 ACSL4O60488 711 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 DCNP07585 359 aaKnown RBP20.31■□□□□ 0.84
CLN3-225ENST00000566824 PDGFRAP16234 1089 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 ABCB4P21439 1286 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 ATP11AP98196 1134 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 MAMLD1Q13495 774 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 ANO4Q32M45 955 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 PLEKHA7Q6IQ23 1121 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 FSTL4Q6MZW2 842 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 CCDC105Q8IYK2 499 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 FBXL6Q8N531 539 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 SPC24Q8NBT2 197 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 PJA1Q8NG27 643 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 ZNF653Q96CK0 615 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 SHDQ96IW2 340 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 VCPIP1Q96JH7 1222 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 MCEEQ96PE7 176 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 C1QTNF1Q9BXJ1 281 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 PACSIN1Q9BY11 444 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 RBM12Q9NTZ6 932 aaKnown RBP20.31■□□□□ 0.84
CLN3-225ENST00000566824 SPTLC3Q9NUV7 552 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 CNOT8Q9UFF9 292 aaKnown RBP20.31■□□□□ 0.84
CLN3-225ENST00000566824 CLEC4EQ9ULY5 219 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 ZNF510Q9Y2H8 683 aa20.31■□□□□ 0.84
CLN3-225ENST00000566824 PRR33A8MZF0 331 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 NEDD8-MDP1E9PL57 170 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 MAN2B1O00754 1011 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 HOXC11O43248 304 aaPredicted RBP20.3■□□□□ 0.84
CLN3-225ENST00000566824 ADH1CP00326 375 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 CXCR3P49682 368 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 NR1H3Q13133 447 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 CCDC122Q5T0U0 273 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 ADGRF1Q5T601 910 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 FYB2Q5VWT5 728 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 NUGGCQ68CJ6 796 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 ALKBH5Q6P6C2 394 aaKnown RBP20.3■□□□□ 0.84
CLN3-225ENST00000566824 UNC45BQ8IWX7 931 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 ETFBKMTQ8IXQ9 262 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 ARHGEF26Q96DR7 871 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 PGAP3Q96FM1 320 aaPredicted RBP20.3■□□□□ 0.84
CLN3-225ENST00000566824 BBS2Q9BXC9 721 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 THAP2Q9H0W7 228 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 NHEJ1Q9H9Q4 299 aaPredicted RBP20.3■□□□□ 0.84
CLN3-225ENST00000566824 ZNHIT6Q9NWK9 470 aaKnown RBP20.3■□□□□ 0.84
CLN3-225ENST00000566824 MARK1Q9P0L2 795 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 MYO1AQ9UBC5 1043 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 STAP1Q9ULZ2 295 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 SNX10Q9Y5X0 201 aa20.3■□□□□ 0.84
CLN3-225ENST00000566824 SSU72P8A0A1W2PR75 194 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 ENDOD1O94919 500 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 TYRP14679 529 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 AOC1P19801 751 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 CDC25BP30305 580 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 GBP1P32455 592 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 GGCXP38435 758 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 GAD2Q05329 585 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 DEUP1Q05D60 604 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 ZNF252P-AS1Q0IIN9 211 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 SLC18A3Q16572 532 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 CDO1Q16878 200 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 TSR1Q2NL82 804 aaKnown RBP20.29■□□□□ 0.84
CLN3-225ENST00000566824 ASTLQ6HA08 431 aaPredicted RBP20.29■□□□□ 0.84
CLN3-225ENST00000566824 VPS36Q86VN1 386 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 PHTF2Q8N3S3 785 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 CPXM2Q8N436 756 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 RNF34Q969K3 372 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 PRICKLE1Q96MT3 831 aaPredicted RBP20.29■□□□□ 0.84
CLN3-225ENST00000566824 P2RY13Q9BPV8 354 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.29■□□□□ 0.84
CLN3-225ENST00000566824 RRN3Q9NYV6 651 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 DLGAP2Q9P1A6 1054 aa20.29■□□□□ 0.84
CLN3-225ENST00000566824 CCP110O43303 1012 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 LATS1O95835 1130 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 EGFP01133 1207 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 PENKP01210 267 aaPredicted RBP20.28■□□□□ 0.84
CLN3-225ENST00000566824 APOEP02649 317 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 CHRNB1P11230 501 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 GPD1P21695 349 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 PTPN9P43378 593 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 GALCP54803 685 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 KDSRQ06136 332 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 PPP2R5DQ14738 602 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 TMEM196Q5HYL7 178 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 PIK3R6Q5UE93 754 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 RAP1GAP2Q684P5 730 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 617.2 ms