RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SMARCE1Q969G3 411 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 TOE1Q96GM8 510 aaKnown RBP17.89■□□□□ 0.45
CLN3-216ENST00000565316 GTPBP2Q9BX10 602 aaKnown RBP17.89■□□□□ 0.45
CLN3-216ENST00000565316 TMEM121BQ9BXQ6 578 aaPredicted RBP17.89■□□□□ 0.45
CLN3-216ENST00000565316 METTL14Q9HCE5 456 aaKnown RBP17.89■□□□□ 0.45
CLN3-216ENST00000565316 CNGB3Q9NQW8 809 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 DNAAF2Q9NVR5 837 aaKnown RBP17.89■□□□□ 0.45
CLN3-216ENST00000565316 SUSD2Q9UGT4 822 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 KCNJ18B7U540 433 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 OPHN1O60890 802 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 GABBR2O75899 941 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 LATS1O95835 1130 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 TOP3BO95985 862 aaKnown RBP17.88■□□□□ 0.45
CLN3-216ENST00000565316 IGLV3-19P01714 112 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 SYPP08247 313 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 PAEPP09466 180 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 HOXD9P28356 352 aaPredicted RBP17.88■□□□□ 0.45
CLN3-216ENST00000565316 FMO5P49326 533 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 HARS2P49590 506 aaKnown RBP17.88■□□□□ 0.45
CLN3-216ENST00000565316 COPAP53621 1224 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 ZNF445P59923 1031 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 MPPE1Q53F39 396 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 WDR45BQ5MNZ6 344 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 TMPRSS6Q8IU80 811 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 ELOA2Q8IYF1 753 aaPredicted RBP17.88■□□□□ 0.45
CLN3-216ENST00000565316 MINDY1Q8N5J2 469 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 CADM4Q8NFZ8 388 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 RNF139Q8WU17 664 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 ERCC4Q92889 916 aaPredicted RBP17.88■□□□□ 0.45
CLN3-216ENST00000565316 DHTKD1Q96HY7 919 aaPredicted RBP17.88■□□□□ 0.45
CLN3-216ENST00000565316 IPO9Q96P70 1041 aaKnown RBP17.88■□□□□ 0.45
CLN3-216ENST00000565316 ABCC13Q9NSE7 274 aa17.88■□□□□ 0.45
CLN3-216ENST00000565316 GOLGA6L4A6NEF3 574 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 C1QTNF9BB2RNN3 333 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 SYNCRIPO60506 623 aaKnown RBP17.87■□□□□ 0.45
CLN3-216ENST00000565316 GJB3O75712 270 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 C1QTNF9P0C862 333 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 NCAM1P13591 858 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 CD59P13987 128 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 PRKCHP24723 683 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 OXTRP30559 389 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 TPMTP51580 245 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 DAOAP59103 153 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 LRMPQ12912 555 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 ADGRF1Q5T601 910 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 MSANTD2Q6P1R3 559 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 UNQ6494/PRO21346Q6UXR6 183 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 KIAA0907Q7Z7F0 614 aaPredicted RBP17.87■□□□□ 0.45
CLN3-216ENST00000565316 SIX6OS1Q8N1H7 587 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.87■□□□□ 0.45
CLN3-216ENST00000565316 KDF1Q8NAX2 398 aaPredicted RBP17.87■□□□□ 0.45
CLN3-216ENST00000565316 SLC35F5Q8WV83 523 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 SORCS1Q8WY21 1168 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 TFAP2BQ92481 460 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 EDEM1Q92611 657 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 SIPA1Q96FS4 1042 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 CEP63Q96MT8 703 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 ZSWIM1Q9BR11 485 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 ADAM33Q9BZ11 813 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 SFMBT1Q9UHJ3 866 aa17.87■□□□□ 0.45
CLN3-216ENST00000565316 HOOK1Q9UJC3 728 aaKnown RBP17.87■□□□□ 0.45
CLN3-216ENST00000565316 PSMA7O14818 248 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 GNSP15586 552 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 SPINK2P20155 84 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 HLA-FP30511 346 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 SLC14A1Q13336 389 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 CNGA2Q16280 664 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 PLEKHG6Q3KR16 790 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 PMF1Q6P1K2 205 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 FOXR2Q6PJQ5 311 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 TMEM270Q6UE05 265 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 RGL4Q8IZJ4 473 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 OR2I1PQ8NGU4 316 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 LMO3Q8TAP4 145 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 IRGQQ8WZA9 623 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 SCNM1Q9BWG6 230 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 IRX2Q9BZI1 471 aaPredicted RBP17.86■□□□□ 0.45
CLN3-216ENST00000565316 CIPCQ9C0C6 399 aa17.86■□□□□ 0.45
CLN3-216ENST00000565316 SPAARA0A1B0GVQ0 90 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 RNF225M0QZC1 329 aaPredicted RBP17.85■□□□□ 0.45
CLN3-216ENST00000565316 P4HA2O15460 535 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 TSPAN3O60637 253 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 IGLV3-27P01718 113 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 CD44P16070 742 aaKnown RBP17.85■□□□□ 0.45
CLN3-216ENST00000565316 MAOBP27338 520 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 SIM1P81133 766 aaPredicted RBP17.85■□□□□ 0.45
CLN3-216ENST00000565316 CAMK2GQ13555 558 aaPredicted RBP17.85■□□□□ 0.45
CLN3-216ENST00000565316 STIM1Q13586 685 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 HNRNPDQ14103 355 aaKnown RBP17.85■□□□□ 0.45
CLN3-216ENST00000565316 WFIKKN2Q8TEU8 576 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 PRCCQ92733 491 aaPredicted RBP17.85■□□□□ 0.45
CLN3-216ENST00000565316 GATA6Q92908 595 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 TMA16Q96EY4 203 aaKnown RBP17.85■□□□□ 0.45
CLN3-216ENST00000565316 NT5C1BQ96P26 610 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 GPR174Q9BXC1 333 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 ZDHHC5Q9C0B5 715 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 TMEM245Q9H330 911 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.85■□□□□ 0.45
CLN3-216ENST00000565316 CKAP5Q14008 2032 aa17.85■□□□□ 0.45
CLN3-216ENST00000565316 ADAMTS9Q9P2N4 1935 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms