RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 UBA5Q9GZZ9 404 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 ABHD16BQ9H3Z7 469 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TOR3AQ9H497 397 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 GGA3Q9NZ52 723 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 GJD2Q9UKL4 321 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 SLC12A4Q9UP95 1085 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 DERAQ9Y315 318 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 PCDHA10Q9Y5I2 948 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3DA0A087WVF3 549 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3IA0A087WXS9 549 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3EA0A087X179 549 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3KA0A087X1G2 549 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3BA6NDS4 549 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3FA6NER0 549 aaPredicted RBP5.29□□□□□ -1.56
LINC00560-201ENST00000564593 FAM90A20PA6NIJ5 464 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3LB9A6J9 549 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 EXOC3O60645 756 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 CYP21A2P08686 494 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3HP0C7X1 549 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 PEPDP12955 493 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 CD53P19397 219 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 DRD4P21917 467 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 GRK5P34947 590 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 MCM2P49736 904 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 RARRES1P49788 294 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 JAK3P52333 1124 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 SIM1P81133 766 aaPredicted RBP5.29□□□□□ -1.56
LINC00560-201ENST00000564593 CFHR3Q02985 330 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TSTD2Q5T7W7 516 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 JAKMIP3Q5VZ66 844 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3GQ6DHY5 549 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3CQ6IPX1 549 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 SYNE3Q6ZMZ3 975 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 GRASPQ7Z6J2 395 aaPredicted RBP5.29□□□□□ -1.56
LINC00560-201ENST00000564593 CPOQ8IVL8 374 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TBC1D3Q8IZP1 549 aaPredicted RBP5.29□□□□□ -1.56
LINC00560-201ENST00000564593 IL17REQ8NFR9 667 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 GLMPQ8WWB7 406 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 HERVK_113Q902F9 699 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 EDC3Q96F86 508 aaKnown RBP5.29□□□□□ -1.56
LINC00560-201ENST00000564593 MAELQ96JY0 434 aaKnown RBP5.29□□□□□ -1.56
LINC00560-201ENST00000564593 SNX18Q96RF0 628 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 MMS19Q96T76 1030 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 PRRX2Q99811 253 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 CDCP1Q9H5V8 836 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 TMLHEQ9NVH6 421 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 CRYL1Q9Y2S2 319 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 RRP7AQ9Y3A4 280 aaKnown RBP5.29□□□□□ -1.56
LINC00560-201ENST00000564593 HS3ST3A1Q9Y663 406 aa5.29□□□□□ -1.56
LINC00560-201ENST00000564593 AGAP5A6NIR3 686 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 MBD3L5A6NJ08 208 aaPredicted RBP5.28□□□□□ -1.56
LINC00560-201ENST00000564593 C1RP00736 705 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 MBPP02686 304 aaPredicted RBP5.28□□□□□ -1.56
LINC00560-201ENST00000564593 MATN1P21941 496 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 DUSP1P28562 367 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 CXCR5P32302 372 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 CYP4F2P78329 520 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 UBE3AQ05086 875 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 WDR93Q6P2C0 686 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 Q6ZPA2 131 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 TERB1Q8NA31 727 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 HS6ST2Q96MM7 605 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 MACROD1Q9BQ69 325 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 NOD2Q9HC29 1040 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 RASSF1Q9NS23 344 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 ABHD10Q9NUJ1 306 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 PACSIN3Q9UKS6 424 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 FZD4Q9ULV1 537 aa5.28□□□□□ -1.56
LINC00560-201ENST00000564593 A0A1B0GVC2 190 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 HEXIM1O94992 359 aaKnown RBP5.27□□□□□ -1.57
LINC00560-201ENST00000564593 CYP3A4P08684 503 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 KRT4P19013 534 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 TLE3Q04726 772 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 DCTN1Q14203 1278 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 DLGAP5Q15398 846 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 RASGRP2Q7LDG7 609 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 FSIP1Q8NA03 581 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 TEX19Q8NA77 164 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 MAFAQ8NHW3 353 aaPredicted RBP5.27□□□□□ -1.57
LINC00560-201ENST00000564593 TRMT61AQ96FX7 289 aaKnown RBP5.27□□□□□ -1.57
LINC00560-201ENST00000564593 ELOVL1Q9BW60 279 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 SCAND2PQ9GZW5 306 aaPredicted RBP5.27□□□□□ -1.57
LINC00560-201ENST00000564593 MAF1Q9H063 256 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 PLEKHA2Q9HB19 425 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 IFT80Q9P2H3 777 aaPredicted RBP5.27□□□□□ -1.57
LINC00560-201ENST00000564593 ZNF69Q9UC07 566 aa5.27□□□□□ -1.57
LINC00560-201ENST00000564593 POLR2AP24928 1970 aaKnown RBP5.26□□□□□ -1.57
LINC00560-201ENST00000564593 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.26□□□□□ -1.57
LINC00560-201ENST00000564593 TISP43B9A030 160 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 STX16-NPEPL1H3BU86 382 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 EYA2O00167 538 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 STX16O14662 325 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 ZNF213O14771 459 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 MGST3O14880 152 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 FYB1O15117 783 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 SEPT4O43236 478 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 FZD7O75084 574 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 MT-CO3P00414 261 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 GCP02774 474 aa5.26□□□□□ -1.57
LINC00560-201ENST00000564593 HNRNPCP07910 306 aaKnown RBP eCLIP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms