RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SGO2Q562F6 1265 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 TADA2BQ86TJ2 420 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 DENND1CQ8IV53 801 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 TTC39CQ8N584 583 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 PNPLA1Q8N8W4 532 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 ANKRD52Q8NB46 1076 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 FAM124BQ9H5Z6 455 aaPredicted RBP19.88■□□□□ 0.77
VPS35-202ENST00000561713 CLEC4EQ9ULY5 219 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 CTNND2Q9UQB3 1225 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 NUMA1Q14980 2115 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 BIN1O00499 593 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 PSMA7O14818 248 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 FMO5P49326 533 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 RGS7P49802 495 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 SCAPQ12770 1279 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 GEN1Q17RS7 908 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 CCDC40Q4G0X9 1142 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 SYCP2LQ5T4T6 812 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 FYB2Q5VWT5 728 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 KIAA1324Q6UXG2 1013 aaKnown RBP19.87■□□□□ 0.77
VPS35-202ENST00000561713 CACUL1Q86Y37 369 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 NAXDQ8IW45 347 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 EDEM1Q92611 657 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 AGO1Q9UL18 857 aaKnown RBP19.87■□□□□ 0.77
VPS35-202ENST00000561713 PCDHB9Q9Y5E1 797 aa19.87■□□□□ 0.77
VPS35-202ENST00000561713 NYNRINQ9P2P1 1898 aaKnown RBP19.87■□□□□ 0.77
VPS35-202ENST00000561713 O00370 1275 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 XPO1O14980 1071 aaKnown RBP19.86■□□□□ 0.77
VPS35-202ENST00000561713 MSI1O43347 362 aaKnown RBP19.86■□□□□ 0.77
VPS35-202ENST00000561713 ZBED1O96006 694 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 PENKP01210 267 aaPredicted RBP19.86■□□□□ 0.77
VPS35-202ENST00000561713 FTH1P19P0C7X4 201 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 BMP6P22004 513 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 MFAP3P55082 362 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 BST2Q10589 180 aaKnown RBP19.86■□□□□ 0.77
VPS35-202ENST00000561713 C19orf48Q6RUI8 117 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 FMNL3Q8IVF7 1028 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 TFAP2BQ92481 460 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 FOXJ1Q92949 421 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 FAXDC2Q96IV6 333 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 CDK5RAP1Q96SZ6 601 aaKnown RBP19.86■□□□□ 0.77
VPS35-202ENST00000561713 LRRC4Q9HBW1 653 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 HESX1Q9UBX0 185 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 SUSD2Q9UGT4 822 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 STRIP2Q9ULQ0 834 aa19.86■□□□□ 0.77
VPS35-202ENST00000561713 GADD45BO75293 160 aaPredicted RBP19.85■□□□□ 0.77
VPS35-202ENST00000561713 LCP1P13796 627 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 GNSP15586 552 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 BRD2P25440 801 aaKnown RBP19.85■□□□□ 0.77
VPS35-202ENST00000561713 CD6P30203 668 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 STX17P56962 302 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 SLC8A3P57103 927 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 COG7P83436 770 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 GRIK2Q13002 908 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 STIM1Q13586 685 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 WDR45BQ5MNZ6 344 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 TMEM270Q6UE05 265 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 ARHGAP18Q8N392 663 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 NELFBQ8WX92 580 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 ADAMTS14Q8WXS8 1223 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 TIGD1Q96MW7 591 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 NT5C1BQ96P26 610 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 IPO9Q96P70 1041 aaKnown RBP19.85■□□□□ 0.77
VPS35-202ENST00000561713 ZSWIM1Q9BR11 485 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 SFMBT1Q9UHJ3 866 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 GPSM3Q9Y4H4 160 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 PCDHB4Q9Y5E5 795 aa19.85■□□□□ 0.77
VPS35-202ENST00000561713 YJEFN3A6XGL0 299 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 E7ENQ6 273 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 GFRA2O00451 464 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 YWHAEP62258 255 aaKnown RBP19.84■□□□□ 0.77
VPS35-202ENST00000561713 FUT11Q495W5 492 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 TTI2Q6NXR4 508 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 ARHGEF19Q8IW93 802 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 SIX6OS1Q8N1H7 587 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 PPM1KQ8N3J5 372 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 ZNF276Q8N554 614 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 SORCS1Q8WY21 1168 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 TOE1Q96GM8 510 aaKnown RBP19.84■□□□□ 0.77
VPS35-202ENST00000561713 HOOK1Q9UJC3 728 aaKnown RBP19.84■□□□□ 0.77
VPS35-202ENST00000561713 STON1Q9Y6Q2 735 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 TP53BP1Q12888 1972 aaPredicted RBP19.84■□□□□ 0.77
VPS35-202ENST00000561713 IGSF10Q6WRI0 2623 aa19.84■□□□□ 0.77
VPS35-202ENST00000561713 ADAMTS20P59510 1910 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 M0QYV0 167 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 RNF225M0QZC1 329 aaPredicted RBP19.83■□□□□ 0.77
VPS35-202ENST00000561713 TSPAN3O60637 253 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 VDRP11473 427 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 TBXAS1P24557 533 aaPredicted RBP19.83■□□□□ 0.77
VPS35-202ENST00000561713 IL12RB1P42701 662 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 PM20D1Q6GTS8 502 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 CCNI2Q6ZMN8 369 aaPredicted RBP19.83■□□□□ 0.77
VPS35-202ENST00000561713 SLCO6A1Q86UG4 719 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 CLEC4CQ8WTT0 213 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 PLD4Q96BZ4 506 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 DHTKD1Q96HY7 919 aaPredicted RBP19.83■□□□□ 0.77
VPS35-202ENST00000561713 CEP63Q96MT8 703 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 GPR174Q9BXC1 333 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 UBXN6Q9BZV1 441 aa19.83■□□□□ 0.77
VPS35-202ENST00000561713 DCLK3Q9C098 648 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms