RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 DMAP1Q9NPF5 467 aaPredicted RBP12.32□□□□□ -0.44
LDLR-212ENST00000560467 TDP1Q9NUW8 608 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.32□□□□□ -0.44
LDLR-212ENST00000560467 EHD2Q9NZN4 543 aa12.32□□□□□ -0.44
LDLR-212ENST00000560467 REXO2Q9Y3B8 237 aaKnown RBP12.32□□□□□ -0.44
LDLR-212ENST00000560467 MYO1FO00160 1098 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 XPO1O14980 1071 aaKnown RBP12.31□□□□□ -0.44
LDLR-212ENST00000560467 TRIM66O15016 1216 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 ATP2C2O75185 946 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 FBXO21O94952 628 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 CYP1A2P05177 515 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 DDX6P26196 483 aaKnown RBP eCLIP12.31□□□□□ -0.44
LDLR-212ENST00000560467 CASQ1P31415 396 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 GJA4P35212 333 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 ARHGAP25P42331 645 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 GPD2P43304 727 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 GALK1P51570 392 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 RPL10AP62906 217 aaKnown RBP12.31□□□□□ -0.44
LDLR-212ENST00000560467 PDCLQ13371 301 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 ZNF569Q5MCW4 686 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 RNF43Q68DV7 783 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 PSAPL1Q6NUJ1 521 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 CC2D1AQ6P1N0 951 aaPredicted RBP12.31□□□□□ -0.44
LDLR-212ENST00000560467 VSTM1Q6UX27 236 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 MON1AQ86VX9 555 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 REXO1L1PQ8IX06 675 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 FUKQ8N0W3 1084 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 C17orf53Q8N3J3 647 aaPredicted RBP12.31□□□□□ -0.44
LDLR-212ENST00000560467 RPLP0P6Q8NHW5 317 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 KIF18AQ8NI77 898 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 SLC35G2Q8TBE7 412 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 ZNF592Q92610 1267 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 MRPS31Q92665 395 aaKnown RBP12.31□□□□□ -0.44
LDLR-212ENST00000560467 MYLPFQ96A32 169 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 PCED1BQ96HM7 432 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 ZC3H10Q96K80 434 aaKnown RBP12.31□□□□□ -0.44
LDLR-212ENST00000560467 C16orf45Q96MC5 204 aaPredicted RBP12.31□□□□□ -0.44
LDLR-212ENST00000560467 SLC22A12Q96S37 553 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 P2RY13Q9BPV8 354 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 EDEM2Q9BV94 578 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 SELENOOQ9BVL4 669 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 NUP85Q9BW27 656 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 B3GNT5Q9BYG0 378 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 DUSP15Q9H1R2 295 aaPredicted RBP12.31□□□□□ -0.44
LDLR-212ENST00000560467 KIF9Q9HAQ2 790 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 CRTAC1Q9NQ79 661 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 VPS45Q9NRW7 570 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 KRT82Q9NSB4 513 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 TAS2R14Q9NYV8 317 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 ZMYM5Q9UJ78 669 aa12.31□□□□□ -0.44
LDLR-212ENST00000560467 TSC2P49815 1807 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 ANK1P16157 1881 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 CTAGE9A4FU28 777 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 GIPC1O14908 333 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 APBB3O95704 486 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 KRT3P12035 628 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 TNNT1P13805 278 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 DRD1P21728 446 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 MAP3K7CLP57077 242 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 ETF1P62495 437 aaKnown RBP12.3□□□□□ -0.44
LDLR-212ENST00000560467 CREB5Q02930 508 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 PDE4CQ08493 712 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 DMC1Q14565 340 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 PDGFRLQ15198 375 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 ZNF77Q15935 545 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 DDR2Q16832 855 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 CFAP221Q4G0U5 840 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 EFHC1Q5JVL4 640 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 OR6B2Q6IFH4 312 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 FAM35AQ86V20 835 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 CPA6Q8N4T0 437 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 CAMKK1Q8N5S9 505 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 SLC35F5Q8WV83 523 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 LACRTQ9GZZ8 138 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 ECT2Q9H8V3 914 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 TRPC7Q9HCX4 862 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 INVSQ9Y283 1065 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 PAXBP1Q9Y5B6 917 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 WNT6Q9Y6F9 365 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 FAM208BQ5VWN6 2430 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 ATRXP46100 2492 aa12.3□□□□□ -0.44
LDLR-212ENST00000560467 USP27XA6NNY8 438 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 C4orf47A7E2U8 309 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 HCRTO43612 131 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 CSH1P0DML2 217 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 CSH2P0DML3 217 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 LCP1P13796 627 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 BDNFP23560 247 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 RRM1P23921 792 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 CYP2F1P24903 491 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 MAGEA11P43364 429 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 PLA2G4AP47712 749 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 RGS7P49802 495 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 NOVA1P51513 510 aaKnown RBP12.29□□□□□ -0.44
LDLR-212ENST00000560467 AMPD2Q01433 879 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 USP4Q13107 963 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 TCEAL1Q15170 157 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 ELF2Q15723 593 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 ODF2Q5BJF6 829 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 MON1BQ7L1V2 547 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms