RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TBC1D14Q9P2M4 693 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 STOML2Q9UJZ1 356 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 PCDHA13Q9Y5I0 950 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 RCCD1A6NED2 376 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 SHISA7A6NL88 538 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 GFRA2O00451 464 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 SLC9A3R1O14745 358 aaPredicted RBP22.61■■□□□ 1.21
SNX1-210ENST00000560260 ACSL4O60488 711 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 LATS1O95835 1130 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 PSMA2P25787 234 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 SLC6A4P31645 630 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 DHCR24Q15392 516 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 FAM133BQ5BKY9 247 aaKnown RBP22.61■■□□□ 1.21
SNX1-210ENST00000560260 RHBDF2Q6PJF5 856 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 LRRC8AQ8IWT6 810 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 UNC45BQ8IWX7 931 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 ARFGAP1Q8N6T3 406 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 ZNF564Q8TBZ8 553 aaPredicted RBP22.61■■□□□ 1.21
SNX1-210ENST00000560260 FNIP1Q8TF40 1166 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 ATP2A3Q93084 1043 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 OTUB2Q96DC9 234 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 DESI2Q9BSY9 194 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 CNPY3Q9BT09 278 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 ECT2Q9H8V3 914 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 OSGEPQ9NPF4 335 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 HEBP1Q9NRV9 189 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.61■■□□□ 1.21
SNX1-210ENST00000560260 ARHGEF38Q9NXL2 777 aa22.61■■□□□ 1.21
SNX1-210ENST00000560260 MYOFQ9NZM1 2061 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 TRDMT1O14717 391 aaKnown RBP22.6■■□□□ 1.21
SNX1-210ENST00000560260 APOEP02649 317 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 CCR1P32246 355 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 GGCXP38435 758 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 ITPRIPL2Q3MIP1 535 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 LY6G5CQ5SRR4 150 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 PIK3R6Q5UE93 754 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 NAIF1Q69YI7 327 aaPredicted RBP22.6■■□□□ 1.21
SNX1-210ENST00000560260 TMEM25Q86YD3 366 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 CPNE8Q86YQ8 564 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 SPHK2Q9NRA0 654 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 CTTNBP2NLQ9P2B4 639 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 ANAPC7Q9UJX3 599 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 INTUQ9ULD6 942 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 CA14Q9ULX7 337 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 ZNF510Q9Y2H8 683 aa22.6■■□□□ 1.21
SNX1-210ENST00000560260 A0A0U1RQJ8 604 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 KRBA1A5PL33 1030 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 NFATC1O95644 943 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 F9P00740 461 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 SGSHP51688 502 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 PFKPQ01813 784 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 SPA17Q15506 151 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 C10orf76Q5T2E6 689 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 DAB2IPQ5VWQ8 1189 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 CPXM2Q8N436 756 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 CPA6Q8N4T0 437 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 CSGALNACT1Q8TDX6 532 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 ATRIPQ8WXE1 791 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 RNF34Q969K3 372 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 AZIN2Q96A70 460 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 PRICKLE1Q96MT3 831 aaPredicted RBP22.59■■□□□ 1.21
SNX1-210ENST00000560260 TKTL2Q9H0I9 626 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 UVRAGQ9P2Y5 699 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 SNX10Q9Y5X0 201 aa22.59■■□□□ 1.21
SNX1-210ENST00000560260 SLC44A4Q53GD3 710 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 BRMS1LQ5PSV4 323 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 ADGRF1Q5T601 910 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 RAP1GAP2Q684P5 730 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 RFWD3Q6PCD5 774 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 TPGS1Q6ZTW0 290 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 CCDC185Q8N715 623 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 ATP6V0D2Q8N8Y2 350 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 RFFLQ8WZ73 363 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 EDAQ92838 391 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 BTN2A3PQ96KV6 586 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 PRMT1Q99873 361 aaKnown RBP22.58■■□□□ 1.21
SNX1-210ENST00000560260 WDCPQ9H6R7 721 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 ARHGEF3Q9NR81 526 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 PIAS3Q9Y6X2 628 aa22.58■■□□□ 1.21
SNX1-210ENST00000560260 TSPAN3O60637 253 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 TECTAO75443 2155 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 PAGE1O75459 146 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 SLC2A3P11169 496 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 GJA4P35212 333 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 SLC11A2P49281 568 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 MLF2Q15773 248 aaPredicted RBP22.57■■□□□ 1.2
SNX1-210ENST00000560260 MS4A13Q5J8X5 152 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 ARTNQ5T4W7 220 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 TXNDC11Q6PKC3 985 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 SND1Q7KZF4 910 aaKnown RBP eCLIP22.57■■□□□ 1.2
SNX1-210ENST00000560260 C12orf40Q86WS4 652 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 CCDC112Q8NEF3 446 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 SLC35G2Q8TBE7 412 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 ANP32BQ92688 251 aaKnown RBP22.57■■□□□ 1.2
SNX1-210ENST00000560260 PEBP4Q96S96 227 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 MARK1Q9P0L2 795 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 WNT16Q9UBV4 365 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 HS3ST4Q9Y661 456 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 KIAA1549LQ6ZVL6 1849 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 SPECC1L-ADORA2AF8WAN1 911 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms