RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GOT1P17174 413 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 TUBP50607 506 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 KPNA1P52294 538 aaPredicted RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 MRPS25P82663 173 aaKnown RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 CCNG2Q16589 344 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 PABPC1LQ4VXU2 614 aaKnown RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 GLE1Q53GS7 698 aaKnown RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 KLHDC10Q6PID8 442 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 ADGRD2Q7Z7M1 963 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 TMEM150AQ86TG1 271 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 RBM23Q86U06 439 aaKnown RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 HS6ST3Q8IZP7 471 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 GPR161Q8N6U8 529 aaKnown RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 PQLC3Q8N755 202 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 PCDH19Q8TAB3 1148 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 GDPD5Q8WTR4 605 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 HDAC7Q8WUI4 952 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 ATG4AQ8WYN0 398 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 FCRL2Q96LA5 508 aaPredicted RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 CSPG4P5Q96PW8 444 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 HAPLN3Q96S86 360 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 LRRC3Q9BY71 257 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 DCLK3Q9C098 648 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 NACA2Q9H009 215 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 OSBPL2Q9H1P3 480 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 ANKZF1Q9H8Y5 726 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 AMACRQ9UHK6 382 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 DNMT3LQ9UJW3 386 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 GREB1Q4ZG55 1949 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 CEP290O15078 2479 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 EPOPA6NHQ4 379 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 FAM72CH0Y354 149 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 COCHO43405 550 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 RAD51CO43502 376 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 CREB3O43889 395 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 GABRR2P28476 465 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 COILP38432 576 aaPredicted RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 FNTAP49354 379 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 SEMA3BQ13214 749 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 FAM72AQ5TYM5 149 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 SLC9A4Q6AI14 798 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 FAM72DQ6L9T8 149 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 TTC27Q6P3X3 843 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 CCDC137Q6PK04 289 aaKnown RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 MAATS1Q7Z4T9 603 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 FAM72BQ86X60 149 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 TMC8Q8IU68 726 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 TTC13Q8NBP0 860 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 CCDC26Q8TAB7 109 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 TIFAQ96CG3 184 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 HAUS1Q96CS2 278 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 RUNDC3BQ96NL0 473 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 FAM118BQ9BPY3 351 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 TLE6Q9H808 572 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 PSD3Q9NYI0 1048 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 OR12D3Q9UGF7 316 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 DPP7Q9UHL4 492 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 HBS1LQ9Y450 684 aaKnown RBP11.62□□□□□ -0.55
USP3-218ENST00000560202 SNX10Q9Y5X0 201 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 HCFC2Q9Y5Z7 792 aa11.62□□□□□ -0.55
USP3-218ENST00000560202 C2orf78A6NCI8 922 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 APOC4-APOC2K7ER74 178 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 EEF2KO00418 725 aaKnown RBP11.61□□□□□ -0.55
USP3-218ENST00000560202 APOL1O14791 398 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 PAGE1O75459 146 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 RFPL2O75678 378 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 MOCS2O96007 188 aaPredicted RBP11.61□□□□□ -0.55
USP3-218ENST00000560202 OAS1P00973 400 aaKnown RBP11.61□□□□□ -0.55
USP3-218ENST00000560202 IGLV3-27P01718 113 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 APOEP02649 317 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 APOC2P02655 101 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 HMBSP08397 361 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 AMPD1P23109 780 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 HOXA9P31269 272 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 KCNJ1P48048 391 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 HCAR3P49019 387 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 ZNF135P52742 658 aaPredicted RBP11.61□□□□□ -0.55
USP3-218ENST00000560202 SMAD3P84022 425 aaKnown RBP11.61□□□□□ -0.55
USP3-218ENST00000560202 DR1Q01658 176 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 RING1Q06587 406 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 SNX1Q13596 522 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 TMCO3Q6UWJ1 677 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 RFX8Q6ZV50 586 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 PLD5Q8N7P1 536 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 EPAS1Q99814 870 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 CORO1BQ9BR76 489 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 FRMD8P1Q9BZ68 369 aaPredicted RBP11.61□□□□□ -0.55
USP3-218ENST00000560202 RNF38Q9H0F5 515 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 SIK2Q9H0K1 926 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 SAE1Q9UBE0 346 aaPredicted RBP11.61□□□□□ -0.55
USP3-218ENST00000560202 PCYOX1Q9UHG3 505 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 SLC12A6Q9UHW9 1150 aa11.61□□□□□ -0.55
USP3-218ENST00000560202 TARSL2A2RTX5 802 aaKnown RBP11.6□□□□□ -0.55
USP3-218ENST00000560202 RFXAPO00287 272 aa11.6□□□□□ -0.55
USP3-218ENST00000560202 TTI1O43156 1089 aa11.6□□□□□ -0.55
USP3-218ENST00000560202 DAPK3O43293 454 aa11.6□□□□□ -0.55
USP3-218ENST00000560202 LIASO43766 372 aa11.6□□□□□ -0.55
USP3-218ENST00000560202 LRIG2O94898 1065 aa11.6□□□□□ -0.55
USP3-218ENST00000560202 HNRNPA1P09651 372 aaKnown RBP eCLIP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms