RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 CPXM2Q8N436 756 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 MINDY1Q8N5J2 469 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 UBR7Q8N806 425 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 RBBP8NLQ8NC74 664 aaPredicted RBP12.17□□□□□ -0.46
USP3-214ENST00000559718 ENGASEQ8NFI3 743 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 DDI1Q8WTU0 396 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 EDEM1Q92611 657 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 SLC35C1Q96A29 364 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 ZNF419Q96HQ0 510 aaPredicted RBP12.17□□□□□ -0.46
USP3-214ENST00000559718 SCNM1Q9BWG6 230 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 PRDM16Q9HAZ2 1276 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 LRRC4Q9HBW1 653 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 RMND1Q9NWS8 449 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 ELOVL2Q9NXB9 296 aa12.17□□□□□ -0.46
USP3-214ENST00000559718 YJEFN3A6XGL0 299 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 KCNJ18B7U540 433 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 E7ENQ6 273 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 O00370 1275 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 MSI1O43347 362 aaKnown RBP12.16□□□□□ -0.46
USP3-214ENST00000559718 TSPAN3O60637 253 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 CALCAP01258 141 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 CYBBP04839 570 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 PROS1P07225 676 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 CD6P30203 668 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 SLC8A3P57103 927 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 BST2Q10589 180 aaKnown RBP12.16□□□□□ -0.46
USP3-214ENST00000559718 STARD3Q14849 445 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 PLEKHG6Q3KR16 790 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 COBLL1Q53SF7 1204 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 BSPRYQ5W0U4 402 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 ISM2Q6H9L7 571 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 ANKS1BQ7Z6G8 1248 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 CACUL1Q86Y37 369 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 HDDC3Q8N4P3 179 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 SPATA20Q8TB22 786 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 TFAP2BQ92481 460 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 PLD4Q96BZ4 506 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 TOE1Q96GM8 510 aaKnown RBP12.16□□□□□ -0.46
USP3-214ENST00000559718 CCDC34Q96HJ3 373 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 IPO9Q96P70 1041 aaKnown RBP12.16□□□□□ -0.46
USP3-214ENST00000559718 GSDMAQ96QA5 445 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 TSG101Q99816 390 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 ZSWIM1Q9BR11 485 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 ADAM33Q9BZ11 813 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 CIPCQ9C0C6 399 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 SLC32A1Q9H598 525 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 USP36Q9P275 1121 aaKnown RBP12.16□□□□□ -0.46
USP3-214ENST00000559718 HESX1Q9UBX0 185 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 RALYQ9UKM9 306 aaKnown RBP12.16□□□□□ -0.46
USP3-214ENST00000559718 CFAP47Q6ZTR5 3102 aa12.16□□□□□ -0.46
USP3-214ENST00000559718 UPK3BL1B0FP48 263 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 UPK3BL2E5RIL1 263 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 RNF225M0QZC1 329 aaPredicted RBP12.15□□□□□ -0.46
USP3-214ENST00000559718 PIK3R2O00459 728 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 HYAL3O43820 417 aaPredicted RBP12.15□□□□□ -0.46
USP3-214ENST00000559718 SYNCRIPO60506 623 aaKnown RBP12.15□□□□□ -0.46
USP3-214ENST00000559718 OPHN1O60890 802 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 VDRP11473 427 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 NCAM1P13591 858 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 HLA-EP13747 358 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 LCP1P13796 627 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 CD59P13987 128 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 HOXD9P28356 352 aaPredicted RBP12.15□□□□□ -0.46
USP3-214ENST00000559718 RGS7P49802 495 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 TPMTP51580 245 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 SGSHP51688 502 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 COPAP53621 1224 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 SIM1P81133 766 aaPredicted RBP12.15□□□□□ -0.46
USP3-214ENST00000559718 PKDCCQ504Y2 493 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 TMPRSS6Q8IU80 811 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 CYB5D2Q8WUJ1 264 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 UCMAQ8WVF2 138 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 KAT5Q92993 513 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 SMARCE1Q969G3 411 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 CAMK1GQ96NX5 476 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 GPR174Q9BXC1 333 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 FAM124BQ9H5Z6 455 aaPredicted RBP12.15□□□□□ -0.46
USP3-214ENST00000559718 ITM2CQ9NQX7 267 aa12.15□□□□□ -0.46
USP3-214ENST00000559718 WSB2Q9NYS7 404 aaPredicted RBP12.15□□□□□ -0.46
USP3-214ENST00000559718 ARMCX3Q9UH62 379 aaPredicted RBP12.15□□□□□ -0.46
USP3-214ENST00000559718 CKAP5Q14008 2032 aa12.15□□□□□ -0.47
USP3-214ENST00000559718 NUMA1Q14980 2115 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 ZFHX4Q86UP3 3567 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 NPC1O15118 1278 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 GJB3O75712 270 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 EPHX1P07099 455 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 HLA-FP30511 346 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 FMO5P49326 533 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 HARS2P49590 506 aaKnown RBP12.14□□□□□ -0.47
USP3-214ENST00000559718 DAOAP59103 153 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 YWHAEP62258 255 aaKnown RBP12.14□□□□□ -0.47
USP3-214ENST00000559718 SYCP2LQ5T4T6 812 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 PMF1Q6P1K2 205 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 TMEM270Q6UE05 265 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 RABEPKQ7Z6M1 372 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 METTL3Q86U44 580 aaKnown RBP12.14□□□□□ -0.47
USP3-214ENST00000559718 SIX6OS1Q8N1H7 587 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 ZNF366Q8N895 744 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 CLEC4CQ8WTT0 213 aa12.14□□□□□ -0.47
USP3-214ENST00000559718 RNF139Q8WU17 664 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms