RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PRCCQ92733 491 aaPredicted RBP13.13□□□□□ -0.31
USP3-213ENST00000559711 CEP295NLQ96MC4 621 aa13.13□□□□□ -0.31
USP3-213ENST00000559711 TMEM109Q9BVC6 243 aa13.13□□□□□ -0.31
USP3-213ENST00000559711 TMEM106CQ9BVX2 250 aa13.13□□□□□ -0.31
USP3-213ENST00000559711 TKTL2Q9H0I9 626 aa13.13□□□□□ -0.31
USP3-213ENST00000559711 TMBIM4Q9HC24 238 aa13.13□□□□□ -0.31
USP3-213ENST00000559711 VPS18Q9P253 973 aa13.13□□□□□ -0.31
USP3-213ENST00000559711 PTPRDP23468 1912 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 KCNN4O15554 427 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 BAIAP3O94812 1187 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 TTC4O95801 387 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 YWHAQP27348 245 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 RPL10AP62906 217 aaKnown RBP13.12□□□□□ -0.31
USP3-213ENST00000559711 TTMPQ5BVD1 217 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 C4orf22Q6V702 233 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 B4GALNT4Q76KP1 1039 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 CMTR2Q8IYT2 770 aaKnown RBP13.12□□□□□ -0.31
USP3-213ENST00000559711 SLC39A11Q8N1S5 342 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 CASP10Q92851 521 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 PWWP2AQ96N64 755 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 ZNF558Q96NG5 402 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 QKIQ96PU8 341 aaKnown RBP eCLIP13.12□□□□□ -0.311e-15■■■■■ 33.6
USP3-213ENST00000559711 HAPLN3Q96S86 360 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 PHACTR1Q9C0D0 580 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 CDC42EP4Q9H3Q1 356 aaKnown RBP13.12□□□□□ -0.31
USP3-213ENST00000559711 PRDM5Q9NQX1 630 aaPredicted RBP13.12□□□□□ -0.31
USP3-213ENST00000559711 OSER1Q9NX31 292 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 PAK5Q9P286 719 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 SLC27A5Q9Y2P5 690 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 MFHAS1Q9Y4C4 1052 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 RAD54BQ9Y620 910 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 CDY1Q9Y6F8 540 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 COL4A6Q14031 1691 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 WDR27A2RRH5 827 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 ADAM12O43184 909 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 GCATO75600 419 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 MAP3K6O95382 1288 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 SOD2P04179 222 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 MYZAPP0CAP1 466 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 ERCC2P18074 760 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 CCR1P32246 355 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 PSEN1P49768 467 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 GABPB1Q06547 395 aaPredicted RBP13.12□□□□□ -0.31
USP3-213ENST00000559711 DUSP4Q13115 394 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 PPP2R5DQ14738 602 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 PSMD5Q16401 504 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 MGAT5BQ3V5L5 792 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 RBM15Q96T37 977 aaKnown RBP eCLIP13.12□□□□□ -0.31
USP3-213ENST00000559711 EPAS1Q99814 870 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 CLIC5Q9NZA1 410 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 GMIPQ9P107 970 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 OR12D3Q9UGF7 316 aa13.12□□□□□ -0.31
USP3-213ENST00000559711 VWA8A3KMH1 1905 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 MICAL3Q7RTP6 2002 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 GOLGA6CA6NDK9 693 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 C5orf60A6NFR6 353 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 GOLGA6L10A6NI86 522 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 ALOX15BO15296 676 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 MFSD11O43934 449 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 SOAT2O75908 522 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 SHBGP04278 402 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 GOLGA6DP0CG33 693 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 LAG3P18627 525 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 HTR7P34969 479 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 ACTN2P35609 894 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 MAGEA4P43358 317 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 NRLP54845 237 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 TPI1P60174 286 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 DSG1Q02413 1049 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 IFFO1Q0D2I5 559 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 CBLBQ13191 982 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 PDK1Q15118 436 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 UBAP2Q5T6F2 1119 aaKnown RBP13.11□□□□□ -0.31
USP3-213ENST00000559711 ANKRD22Q5VYY1 191 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 PDZD4Q76G19 769 aaPredicted RBP13.11□□□□□ -0.31
USP3-213ENST00000559711 CROCCP2Q86T23 111 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 STKLD1Q8NE28 680 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 TFB1MQ8WVM0 346 aaKnown RBP13.11□□□□□ -0.31
USP3-213ENST00000559711 RNF34Q969K3 372 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 ATP6V1G3Q96LB4 118 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 SERPINB11Q96P15 392 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 SEPT5Q99719 369 aaPredicted RBP13.11□□□□□ -0.31
USP3-213ENST00000559711 IL23AQ9NPF7 189 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 GOLGA6AQ9NYA3 693 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 NINJ2Q9NZG7 142 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 HSFX1Q9UBD0 423 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 SFMBT1Q9UHJ3 866 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 ADAM21Q9UKJ8 722 aa13.11□□□□□ -0.31
USP3-213ENST00000559711 FNDC1Q4ZHG4 1894 aaPredicted RBP13.11□□□□□ -0.31
USP3-213ENST00000559711 KCNU1A8MYU2 1149 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 HMGB1P1B2RPK0 211 aaPredicted RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 ZNF189O75820 626 aaPredicted RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 LRIG2O94898 1065 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 ZDHHC11BP0C7U3 371 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 ACRP10323 421 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 OR1D2P34982 312 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 MAGEA6P43360 314 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 TUFMP49411 452 aaKnown RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 GYS2P54840 703 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 BTG3Q14201 252 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms