RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ATICP31939 592 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 ARRB2P32121 409 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 SOX2P48431 317 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 GPS1Q13098 491 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 SMTNL2Q2TAL5 461 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 GLE1Q53GS7 698 aaKnown RBP5.28□□□□□ -1.56
VPS13C-208ENST00000559119 NUGGCQ68CJ6 796 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-208ENST00000559119 RFX6Q8HWS3 928 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 MAGEB6Q8N7X4 407 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 LPAR1Q92633 364 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 GJA10Q969M2 543 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 MSI2Q96DH6 328 aaKnown RBP5.28□□□□□ -1.56
VPS13C-208ENST00000559119 STRBPQ96SI9 672 aaKnown RBP5.28□□□□□ -1.56
VPS13C-208ENST00000559119 MYLK2Q9H1R3 596 aa5.28□□□□□ -1.56
VPS13C-208ENST00000559119 SPATA31A5Q5VU36 1347 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 EMSYQ7Z589 1322 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 SPATA31A7Q8IWB4 1347 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 TPP1O14773 563 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 SPTLC2O15270 562 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 ATG13O75143 517 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 SCGB1D2O95969 90 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 HRGP04196 525 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 MMP8P22894 467 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 TNFRSF8P28908 595 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 NXNQ6DKJ4 435 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 DHRS13Q6UX07 377 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 TCEAL8Q8IYN2 117 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 ATP2A3Q93084 1043 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 ZNF845Q96IR2 970 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-208ENST00000559119 PIMREGQ9BSJ6 248 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 SF3B5Q9BWJ5 86 aaKnown RBP5.27□□□□□ -1.57
VPS13C-208ENST00000559119 ZBTB26Q9HCK0 441 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 TXLNGQ9NUQ3 528 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 TMOD4Q9NZQ9 345 aa5.27□□□□□ -1.57
VPS13C-208ENST00000559119 DDX20Q9UHI6 824 aaKnown RBP5.27□□□□□ -1.57
VPS13C-208ENST00000559119 THRAP3Q9Y2W1 955 aaKnown RBP5.27□□□□□ -1.57
VPS13C-208ENST00000559119 H0YGN5 161 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 THAP12O43422 761 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 COQ9O75208 318 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 AKR1A1P14550 325 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 PLA2G2AP14555 144 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 MT3P25713 68 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 ZNF84P51523 738 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 PPP2R5AQ15172 486 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 ELF2Q15723 593 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 ODF3L2Q3SX64 289 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 ANXA2RQ3ZCQ2 193 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 C6orf10Q5SRN2 563 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 LCE1EQ5T753 118 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 LIPMQ5VYY2 423 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 RRAGBQ5VZM2 374 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 ZNF324BQ6AW86 544 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-208ENST00000559119 CAPRIN2Q6IMN6 1127 aaKnown RBP5.26□□□□□ -1.57
VPS13C-208ENST00000559119 RAVER1Q8IY67 606 aaKnown RBP5.26□□□□□ -1.57
VPS13C-208ENST00000559119 IQCF1Q8N6M8 205 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 ARL14EPQ8N8R7 260 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-208ENST00000559119 OR52L2PQ8NGH6 319 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 CENPIQ92674 756 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-208ENST00000559119 PMM1Q92871 262 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 MIB2Q96AX9 1013 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 WDR24Q96S15 920 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 AAMDCQ9H7C9 122 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 AS3MTQ9HBK9 375 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 PCDHA7Q9UN72 937 aa5.26□□□□□ -1.57
VPS13C-208ENST00000559119 DPPA5A6NC42 116 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 F8W8V4 182 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 KRT86O43790 486 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 CHRNB1P11230 501 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 SLC8A1P32418 973 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 MLH1P40692 756 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 SEMA3BQ13214 749 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 KRT81Q14533 505 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 TMEM196Q5HYL7 178 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 PIK3CD-AS1Q5SR53 167 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 FAM90A2PQ658T7 463 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 ABLIM2Q6H8Q1 611 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 KYAT3Q6YP21 454 aaKnown RBP5.25□□□□□ -1.57
VPS13C-208ENST00000559119 KRT28Q7Z3Y7 464 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 RHPN2Q8IUC4 686 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 IQCDQ96DY2 449 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 ERVK-5Q9HDB9 667 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 UTS2RQ9UKP6 389 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 SNX13Q9Y5W8 968 aa5.25□□□□□ -1.57
VPS13C-208ENST00000559119 ACOT8O14734 319 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 TNFRSF13BO14836 293 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-208ENST00000559119 CBFA2T3O75081 653 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 ARP10275 920 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 CIITAP33076 1130 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 AGTR2P50052 363 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 GAD2Q05329 585 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 PGM5Q15124 567 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 NFE2Q16621 373 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-208ENST00000559119 FAXCQ5TGI0 409 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 ISM2Q6H9L7 571 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 CRTC1Q6UUV9 634 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 CHST15Q7LFX5 561 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-208ENST00000559119 SPATA2LQ8IUW3 424 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-208ENST00000559119 TMEM174Q8WUU8 243 aa5.24□□□□□ -1.57
VPS13C-208ENST00000559119 OIT3Q8WWZ8 545 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 186 ms