RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ALG13Q9NP73 1137 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 TMEM74BQ9NUR3 256 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 RNF7Q9UBF6 113 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 TESQ9UGI8 421 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 STEAP1Q9UHE8 339 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 HSF4Q9ULV5 492 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 VPS4AQ9UN37 437 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 ARHGAP26Q9UNA1 814 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 ZBTB1Q9Y2K1 713 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 FRMD4BQ9Y2L6 1034 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 RRP7AQ9Y3A4 280 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 NEU2Q9Y3R4 380 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 POLR2AP24928 1970 aaKnown RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 COL4A3Q01955 1670 aa1.86□□□□□ -2.11
USP3-209ENST00000558925 FNDC1Q4ZHG4 1894 aaPredicted RBP1.86□□□□□ -2.11
USP3-209ENST00000558925 CCDC187A0A096LP49 1063 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 DYTNA2CJ06 578 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 WDR27A2RRH5 827 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 VWA3AA6NCI4 1184 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 TMEM200CA6NKL6 621 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 CYSRT1A8MQ03 144 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 B4E171 279 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 SLC16A3O15427 465 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 PRAMEF2O60811 474 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 KAT7O95251 611 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 PDE8BO95263 885 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 MBPP02686 304 aaPredicted RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 HLA-DOAP06340 250 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 LDHCP07864 332 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 CNPP09543 421 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 ELFN1P0C7U0 828 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 NR2F6P10588 404 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 ACP5P13686 325 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 ENGP17813 658 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 XBP1P17861 261 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 CXCR5P32302 372 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 ELF1P32519 619 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 KRT9P35527 623 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 DDIT3P35638 169 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 GGT5P36269 586 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 BMPR1AP36894 532 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 ZEB1P37275 1124 aaPredicted RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 TSPAN7P41732 249 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 GSTM5P46439 218 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 RXRGP48443 463 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 POLE2P56282 527 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 RPL15P61313 204 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 RAE1P78406 368 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 GUCY1B3Q02153 619 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 TLE2Q04725 743 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 MAPK7Q13164 816 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 TRPC3Q13507 836 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 EFR3AQ14156 821 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 CLCA4Q14CN2 919 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 TXNRD1Q16881 649 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 AAK1Q2M2I8 961 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 NBPF8Q3BBV2 869 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 UBAP2Q5T6F2 1119 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 MAP3K21Q5TCX8 1036 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 HECTD2Q5U5R9 776 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 CCDC30Q5VVM6 783 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 ATG16L1Q676U5 607 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 DGAT2L7PQ6IED9 249 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 VWA1Q6PCB0 445 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 ANKS1BQ7Z6G8 1248 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 PCGF5Q86SE9 256 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 DTX2Q86UW9 622 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 TTC30AQ86WT1 665 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 COLGALT2Q8IYK4 626 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 SLC44A3Q8N4M1 653 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 LRRC71Q8N4P6 559 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 TMEM57Q8N5G2 664 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 FAM71DQ8N9W8 422 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 FAM98AQ8NCA5 519 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 KCNG4Q8TDN1 519 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 SLC25A43Q8WUT9 341 aaPredicted RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 UCMAQ8WVF2 138 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 WDR60Q8WVS4 1066 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 ST8SIA4Q92187 359 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 CPT1BQ92523 772 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 RSC1A1Q92681 617 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 RFKQ969G6 155 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 LENG9Q96B70 501 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 ZBTB10Q96DT7 871 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 KTI12Q96EK9 354 aaPredicted RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 TRMT61AQ96FX7 289 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 RBM17Q96I25 401 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 REXO5Q96IC2 774 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 Q96MF0 132 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 LENG8Q96PV6 779 aaPredicted RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 EIF3CQ99613 913 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 BARD1Q99728 777 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 REEP2Q9BRK0 252 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 PAAF1Q9BRP4 392 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 NUDT22Q9BRQ3 303 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 PHF7Q9BWX1 381 aaPredicted RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 PAIP1Q9H074 479 aaKnown RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 CLPBQ9H078 707 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 USP44Q9H0E7 712 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 OSBPL5Q9H0X9 879 aaPredicted RBP1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms