RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SMIM28A0A1B0GU29 152 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 I3L4J1 428 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 PPP1R12AO14974 1030 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 OPHN1O60890 802 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 FBXO21O94952 628 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 LCP1P13796 627 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CCDC130P13994 396 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 LRPAP1P30533 357 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 SULT1E1P49888 294 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 ZNF135P52742 658 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 KCNJ2P63252 427 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CDK18Q07002 472 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 FAAP100Q0VG06 881 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 SNX17Q15036 470 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CA9Q16790 459 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 SLC25A52Q3SY17 297 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 GLRA4Q5JXX5 417 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 ZNF449Q6P9G9 518 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 PDZD4Q76G19 769 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 NLRP9Q7RTR0 991 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 TLK2Q86UE8 772 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CAND1Q86VP6 1230 aaKnown RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 IGDCC3Q8IVU1 814 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 PPM1NQ8N819 430 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 B3GALNT2Q8NCR0 500 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 KCTD13Q8WZ19 329 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CDKL2Q92772 493 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 SPATA13Q96N96 652 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 OLFM3Q96PB7 478 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 KCTD15Q96SI1 283 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 HNRNPABQ99729 332 aaKnown RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 EBNA1BP2Q99848 306 aaKnown RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 DUSP16Q9BY84 665 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 DPEP3Q9H4B8 488 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CD248Q9HCU0 757 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 SLCO1B3Q9NPD5 702 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 SLC38A7Q9NVC3 462 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 LNPEPQ9UIQ6 1025 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 GGT7Q9UJ14 662 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 FZD10Q9ULW2 581 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CHKBQ9Y259 395 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 Q9Y3F1 56 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 FAM159BA6NKW6 160 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 TRIM49D1C9J1S8 452 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 HAS3O00219 553 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 TRAFD1O14545 582 aaPredicted RBP7.5□□□□□ -1.21
VPS13C-206ENST00000558338 DYNC1LI2O43237 492 aaPredicted RBP7.5□□□□□ -1.21
VPS13C-206ENST00000558338 DGKIO75912 1065 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 RPLP2P05387 115 aaKnown RBP7.5□□□□□ -1.21
VPS13C-206ENST00000558338 KRT16P08779 473 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 NPR3P17342 541 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 NOS2P35228 1153 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 ETV4P43268 484 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 GLUD2P49448 558 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 TMEM62Q0P6H9 643 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 FOXD4Q12950 439 aaPredicted RBP7.5□□□□□ -1.21
VPS13C-206ENST00000558338 PDK1Q15118 436 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 PRKD1Q15139 912 aaPredicted RBP7.5□□□□□ -1.21
VPS13C-206ENST00000558338 PLEKHG6Q3KR16 790 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 RAB6CQ53S08 254 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 STEAP4Q687X5 459 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 NCBP2-AS2Q69YL0 99 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 KCNT2Q6UVM3 1135 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 CEP57Q86XR8 500 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 CFAP61Q8NHU2 1237 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 NPLOC4Q8TAT6 608 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 CCDC110Q8TBZ0 833 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 SLC2A14Q8TDB8 520 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 ACMSDQ8TDX5 336 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 SH3TC2Q8TF17 1288 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 DEPDC1BQ8WUY9 529 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 HTR3CQ8WXA8 447 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 ARMC5Q96C12 935 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 ANKRD27Q96NW4 1050 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 FAM111AQ96PZ2 611 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 SLC9A7Q96T83 725 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 APOL6Q9BWW8 343 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 B3GNT5Q9BYG0 378 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 RAB6CQ9H0N0 254 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 AP5M1Q9H0R1 490 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 IRF2BPLQ9H1B7 796 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 ZNF408Q9H9D4 720 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 LRRC4Q9HBW1 653 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 NPHS2Q9NP85 383 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 RRN3Q9NYV6 651 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 NOP53Q9NZM5 478 aaKnown RBP7.5□□□□□ -1.21
VPS13C-206ENST00000558338 NME7Q9Y5B8 376 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 USP3Q9Y6I4 520 aa7.5□□□□□ -1.21
VPS13C-206ENST00000558338 C17orf102A2RUQ5 167 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 GOLGA8RI6L899 631 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 M0QZ92 97 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 BIRC5O15392 142 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 DNAJC6O75061 913 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 HAUS5O94927 633 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 C1QAP02745 245 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 PDGFRBP09619 1106 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 YBX3P16989 372 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ARFIP2P53365 341 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 ADAM17P78536 824 aa7.49□□□□□ -1.21
VPS13C-206ENST00000558338 MRPS5P82675 430 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms