RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 AP1G2O75843 785 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 SETSIPP0DME0 302 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 UBA1P22314 1058 aaKnown RBP16.8■□□□□ 0.28
SHMT2-232ENST00000557487 FDFT1P37268 417 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 APLP1P51693 650 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 DEUP1Q05D60 604 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 KYAT1Q16773 422 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 FSCBQ5H9T9 825 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 OR6B2Q6IFH4 312 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 ZNF534Q76KX8 674 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 GSTCDQ8NEC7 633 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 PCDH19Q8TAB3 1148 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 DCPSQ96C86 337 aaKnown RBP16.8■□□□□ 0.28
SHMT2-232ENST00000557487 EBF4Q9BQW3 602 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 C20orf27Q9GZN8 174 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 HOXC10Q9NYD6 342 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 MORF4L1Q9UBU8 362 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 HEY1Q9Y5J3 304 aa16.8■□□□□ 0.28
SHMT2-232ENST00000557487 UGT1A9O60656 530 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 PLIN3O60664 434 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 SIN3BO75182 1162 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 STAU1O95793 577 aaKnown RBP16.79■□□□□ 0.28
SHMT2-232ENST00000557487 ZCCHC18P0CG32 403 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 FGF3P11487 239 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-232ENST00000557487 TNFAIP2Q03169 654 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 INCA1Q0VD86 236 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 KCNK16Q96T55 309 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 APOL6Q9BWW8 343 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 SMYD3Q9H7B4 428 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 UGT1A7Q9HAW7 530 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 UGT1A10Q9HAW8 530 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 UGT1A8Q9HAW9 530 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 GBA2Q9HCG7 927 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-232ENST00000557487 EIF2B3Q9NR50 452 aaKnown RBP16.79■□□□□ 0.28
SHMT2-232ENST00000557487 PICK1Q9NRD5 415 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 ZNF112Q9UJU3 913 aa16.79■□□□□ 0.28
SHMT2-232ENST00000557487 BARX2Q9UMQ3 279 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-232ENST00000557487 ZNF189O75820 626 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-232ENST00000557487 GSRP00390 522 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 SRGAP2CP0DJJ0 459 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 SDC4P31431 198 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 CDH8P55286 799 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 PDE1BQ01064 536 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 ITGA9Q13797 1035 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 CCDC14Q49A88 953 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 METTL21CQ5VZV1 264 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 TRMT10BQ6PF06 316 aaKnown RBP16.78■□□□□ 0.28
SHMT2-232ENST00000557487 CATSPERGQ6ZRH7 1159 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 FAM183BPQ6ZVS7 135 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 RAPH1Q70E73 1250 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 ZDHHC17Q8IUH5 632 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 TMEM126BQ8IUX1 230 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 C1orf127Q8N9H9 656 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 HEXIM2Q96MH2 286 aaKnown RBP16.78■□□□□ 0.28
SHMT2-232ENST00000557487 QKIQ96PU8 341 aaKnown RBP eCLIP16.78■□□□□ 0.28
SHMT2-232ENST00000557487 TWNKQ96RR1 684 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 LBHD1Q9BQE6 289 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-232ENST00000557487 EBF3Q9H4W6 596 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 ASB7Q9H672 318 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 ZNF395Q9H8N7 513 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-232ENST00000557487 GGA3Q9NZ52 723 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 HACD1B0YJ81 288 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 RNASEH1O60930 286 aaKnown RBP16.78■□□□□ 0.28
SHMT2-232ENST00000557487 HARS2P49590 506 aaKnown RBP16.78■□□□□ 0.28
SHMT2-232ENST00000557487 NIPAL4Q0D2K0 466 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 N4BP2L1Q5TBK1 243 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-232ENST00000557487 FAXCQ5TGI0 409 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 TRNP1Q6NT89 227 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 METTL7BQ6UX53 244 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 GTF2IRD1Q9UHL9 959 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 CDH22Q9UJ99 828 aa16.78■□□□□ 0.28
SHMT2-232ENST00000557487 MX2P20592 715 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 GARSP41250 739 aaKnown RBP16.77■□□□□ 0.28
SHMT2-232ENST00000557487 IDH3AP50213 366 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 SLC25A3Q00325 362 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 CCNIQ14094 377 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 C15orf59Q2T9L4 293 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-232ENST00000557487 CCDC153Q494R4 210 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 CFAP157Q5JU67 520 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 SYCP2LQ5T4T6 812 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 SLC26A7Q8TE54 656 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 ZNF778Q96MU6 729 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 SNRNP25Q9BV90 132 aaKnown RBP16.77■□□□□ 0.28
SHMT2-232ENST00000557487 NFKBIZQ9BYH8 718 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 CDT1Q9H211 546 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 Q9H521 79 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 C6orf203Q9P0P8 240 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-232ENST00000557487 BCAP29Q9UHQ4 241 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 EMCNQ9ULC0 261 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 CDY2AQ9Y6F7 541 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 CDY1Q9Y6F8 540 aa16.77■□□□□ 0.28
SHMT2-232ENST00000557487 H2AFYO75367 372 aaKnown RBP16.76■□□□□ 0.27
SHMT2-232ENST00000557487 USP1O94782 785 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 METTL18O95568 372 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 MCF2P10911 925 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 VCLP18206 1134 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 PTPRAP18433 802 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 EDNRBP24530 442 aa16.76■□□□□ 0.27
SHMT2-232ENST00000557487 TCF7P36402 384 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-232ENST00000557487 LSAMPQ13449 338 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms