RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 IFNA2P01563 188 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 HOXD12P35452 270 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 EPHB1P54762 984 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 GAD2Q05329 585 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 CRYZQ08257 329 aaKnown RBP3.89□□□□□ -1.79
SCFD1-218ENST00000556256 DDR1Q08345 913 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 SLC29A2Q14542 456 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 PGM5Q15124 567 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 SKAP1Q86WV1 359 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 P3H2Q8IVL5 708 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 RAVER1Q8IY67 606 aaKnown RBP3.89□□□□□ -1.79
SCFD1-218ENST00000556256 IL31RAQ8NI17 732 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 KAT2BQ92831 832 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 CHMP4CQ96CF2 233 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 ZNF668Q96K58 619 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-218ENST00000556256 SENP7Q9BQF6 1050 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 TTLL2Q9BWV7 592 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 STK31Q9BXU1 1019 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 ATP6V0A4Q9HBG4 840 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 ABHD10Q9NUJ1 306 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 STK32BQ9NY57 414 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 DNAJB11Q9UBS4 358 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 DKK4Q9UBT3 224 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 IPO11Q9UI26 975 aaKnown RBP3.89□□□□□ -1.79
SCFD1-218ENST00000556256 VPS51Q9UID3 782 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 VPS4AQ9UN37 437 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 BTBD18B2RXH4 712 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 H3BML4 177 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 RAB27BO00194 218 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 PPP1R3DO95685 299 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 UMODP07911 640 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 SLC7A1P30825 629 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 PCYT1AP49585 367 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 CPT1AP50416 773 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 MTAPQ13126 283 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 GAB1Q13480 694 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 SHBQ15464 509 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 NFE2Q16621 373 aaPredicted RBP3.88□□□□□ -1.79
SCFD1-218ENST00000556256 IFIT1BQ5T764 474 aaKnown RBP3.88□□□□□ -1.79
SCFD1-218ENST00000556256 CENPIQ92674 756 aaPredicted RBP3.88□□□□□ -1.79
SCFD1-218ENST00000556256 GJA10Q969M2 543 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 FAM83DQ9H4H8 585 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 HDAC9Q9UKV0 1011 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 COL15A1P39059 1388 aa3.88□□□□□ -1.79
SCFD1-218ENST00000556256 TRIM43BA6NCK2 446 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 AQP7P3A6NL99 342 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 SMTNL1A8MU46 457 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 PARNO95453 639 aaKnown RBP3.87□□□□□ -1.79
SCFD1-218ENST00000556256 CPA1P15085 419 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 RBL1P28749 1068 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 HTR7P34969 479 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 PDLIM4P50479 330 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 ZNF84P51523 738 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 ROR2Q01974 943 aaKnown RBP3.87□□□□□ -1.79
SCFD1-218ENST00000556256 Q0VFX4 171 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 KCNAB1Q14722 419 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 SPSB3Q6PJ21 355 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 FAM83HQ6ZRV2 1179 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-218ENST00000556256 C7orf57Q8NEG2 295 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 PPP1R35Q8TAP8 253 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 JDP2Q8WYK2 163 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 TRIM43Q96BQ3 446 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-218ENST00000556256 ZDHHC12Q96GR4 267 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 URB1-AS1Q96HZ7 61 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 SUCLG2Q96I99 432 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 HTATIP2Q9BUP3 242 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 ELOVL1Q9BW60 279 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 ISCUQ9H1K1 167 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 TASP1Q9H6P5 420 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 CPNE7Q9UBL6 633 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 G3BP2Q9UN86 482 aaKnown RBP3.87□□□□□ -1.79
SCFD1-218ENST00000556256 ANKRD6Q9Y2G4 727 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 EID1Q9Y6B2 187 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 USP19O94966 1318 aa3.87□□□□□ -1.79
SCFD1-218ENST00000556256 A0A0B4J293 547 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 OR6C75A6NL08 312 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 PF4V1P10720 104 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 TPH1P17752 444 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 ACVR2AP27037 513 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 DUSP1P28562 367 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 RAB27AP51159 221 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 SUMO3P55854 103 aaPredicted RBP3.86□□□□□ -1.79
SCFD1-218ENST00000556256 PIN1Q13526 163 aaPredicted RBP3.86□□□□□ -1.79
SCFD1-218ENST00000556256 AASDHQ4L235 1098 aaPredicted RBP3.86□□□□□ -1.79
SCFD1-218ENST00000556256 MANEALQ5VSG8 457 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 LIPMQ5VYY2 423 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 ARMC9Q7Z3E5 817 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 CTU1Q7Z7A3 348 aaKnown RBP3.86□□□□□ -1.79
SCFD1-218ENST00000556256 FSTL5Q8N475 847 aaPredicted RBP3.86□□□□□ -1.79
SCFD1-218ENST00000556256 AKAP1Q92667 903 aaKnown RBP eCLIP3.86□□□□□ -1.79
SCFD1-218ENST00000556256 HOOK2Q96ED9 719 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 RTFDC1Q9BY42 306 aaPredicted RBP3.86□□□□□ -1.79
SCFD1-218ENST00000556256 RNF26Q9BY78 433 aaPredicted RBP3.86□□□□□ -1.79
SCFD1-218ENST00000556256 DCLK3Q9C098 648 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 CDH19Q9H159 772 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 SACM1LQ9NTJ5 587 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 PLEKHB1Q9UF11 243 aaPredicted RBP3.86□□□□□ -1.79
SCFD1-218ENST00000556256 IP6K2Q9UHH9 426 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 PTGDR2Q9Y5Y4 395 aa3.86□□□□□ -1.79
SCFD1-218ENST00000556256 SPATA31A5Q5VU36 1347 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms