RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PMM2O15305 246 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 USP12O75317 370 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 ARP10275 920 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 KRT10P13645 584 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 PLA2G2AP14555 144 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 MT3P25713 68 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 GSTM5P46439 218 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 HSF1Q00613 529 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 AASDHQ4L235 1098 aaPredicted RBP4.43□□□□□ -1.7
SCFD1-216ENST00000555550 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.43□□□□□ -1.7
SCFD1-216ENST00000555550 KRTAP5-1Q6L8H4 278 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 CCDC28AQ8IWP9 274 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 B4GALNT2Q8NHY0 566 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 PIGKQ92643 395 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 KAZALD1Q96I82 304 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 SNX27Q96L92 541 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 C8orf48Q96LL4 319 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 SCNM1Q9BWG6 230 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 PCDHAC1Q9H158 963 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 MYO1AQ9UBC5 1043 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 ZMYND8Q9ULU4 1186 aaPredicted RBP4.43□□□□□ -1.7
SCFD1-216ENST00000555550 EVPLQ92817 2033 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 IFITM10A6NMD0 228 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 APAF1O14727 1248 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 GAS8-AS1O95177 125 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 NDST3O95803 873 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 IGHMBP2P38935 993 aaKnown RBP4.42□□□□□ -1.7
SCFD1-216ENST00000555550 SEMA3BQ13214 749 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 MTA1Q13330 715 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 KCNJ12Q14500 433 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 ARL13BQ3SXY8 428 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 TMEM196Q5HYL7 178 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 FBXO38Q6PIJ6 1188 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 KSR2Q6VAB6 950 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 ZNF793Q6ZN11 406 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 RFX6Q8HWS3 928 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 UEVLDQ8IX04 471 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 RNF152Q8N8N0 203 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 ASB5Q8WWX0 329 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 SLC25A28Q96A46 364 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 LMLNQ96KR4 655 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 MRPL44Q9H9J2 332 aaKnown RBP4.42□□□□□ -1.7
SCFD1-216ENST00000555550 STARD7Q9NQZ5 370 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 ABHD10Q9NUJ1 306 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 MAN2B2Q9Y2E5 1009 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 CEP83Q9Y592 693 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 SPATA31A1Q5TZJ5 1347 aa4.42□□□□□ -1.7
SCFD1-216ENST00000555550 IGLV5-39A0A0G2JS06 123 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 A0A1W2PPC4 97 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 EME2A4GXA9 379 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-216ENST00000555550 RRHO14718 337 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 KRT86O43790 486 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 PLAUP00749 431 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 MBPP02686 304 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-216ENST00000555550 FGF2P09038 288 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 SRGAP2BP0DMP2 458 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 SLC5A1P13866 664 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 TRIM27P14373 513 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 MMP8P22894 467 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 MST1P26927 711 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 DUSP1P28562 367 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 ZXDBP98169 803 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 KRT81Q14533 505 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 ARHGAP15Q53QZ3 475 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 RAP1GAP2Q684P5 730 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 TLDC1Q6P9B6 456 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 TTC30AQ86WT1 665 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 AKAP1Q92667 903 aaKnown RBP eCLIP4.41□□□□□ -1.7
SCFD1-216ENST00000555550 PMM1Q92871 262 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 TRMT61AQ96FX7 289 aaKnown RBP4.41□□□□□ -1.7
SCFD1-216ENST00000555550 ZNF479Q96JC4 524 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 FCRL5Q96RD9 977 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 WDR24Q96S15 920 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 COLEC11Q9BWP8 271 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 TM2D2Q9BX73 214 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 EIF2AQ9BY44 585 aaKnown RBP4.41□□□□□ -1.7
SCFD1-216ENST00000555550 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.41□□□□□ -1.7
SCFD1-216ENST00000555550 ASNSD1Q9NWL6 643 aa4.41□□□□□ -1.7
SCFD1-216ENST00000555550 VIPP01282 170 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 NGFRP08138 427 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 NBPF7P0C2Y1 421 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-216ENST00000555550 HARSP12081 509 aaKnown RBP4.4□□□□□ -1.71
SCFD1-216ENST00000555550 ST6GAL1P15907 406 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 PECAM1P16284 738 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-216ENST00000555550 MATN1P21941 496 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 TNFRSF8P28908 595 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 SLC5A2P31639 672 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 PMS2P11Q13670 270 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 ELF2Q15723 593 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 LONRF1Q17RB8 773 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 MANEAQ5SRI9 462 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 HIBCHQ6NVY1 386 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-216ENST00000555550 KIAA0408Q6ZU52 694 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 KRT27Q7Z3Y8 459 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 MPLKIPQ8TAP9 179 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 WIPF2Q8TF74 440 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-216ENST00000555550 NLRP4Q96MN2 994 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 SENP7Q9BQF6 1050 aa4.4□□□□□ -1.71
SCFD1-216ENST00000555550 RNF26Q9BY78 433 aaPredicted RBP4.4□□□□□ -1.71
SCFD1-216ENST00000555550 SEMA4BQ9NPR2 832 aaPredicted RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms