RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	NMT2	O60551	498 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	JUN	P05412	331 aa	Known RBP	6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	PDHB	P11177	359 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	TDGF1	P13385	188 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	ZSCAN20	P17040	1043 aa	Predicted RBP	6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	ATP5J	P18859	108 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	CSRP1	P21291	193 aa	Known RBP	6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	SOX5	P35711	763 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	METAP2	P50579	478 aa	Known RBP eCLIP	6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	IGBP1	P78318	339 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	ADAM8	P78325	824 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	PPARA	Q07869	468 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	TROAP	Q12815	778 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	PGM5	Q15124	567 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	COL28A1	Q2UY09	1125 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	NRN1L	Q496H8	165 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	FAM111B	Q6SJ93	734 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	TPRG1	Q6ZUI0	275 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	CXorf67	Q86X51	503 aa	Predicted RBP	6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	CDYL2	Q8N8U2	506 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	HDAC7	Q8WUI4	952 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	GAB3	Q8WWW8	586 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	SEPT1	Q8WYJ6	367 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	EXTL1	Q92935	676 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	TTC14	Q96N46	770 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	SENP7	Q9BQF6	1050 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	TMEM47	Q9BQJ4	181 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	KRTAP4-2	Q9BYR5	136 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	NAPB	Q9H115	298 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	ARRDC1-AS1	Q9H2J1	176 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	SMARCAD1	Q9H4L7	1026 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	RCAN3	Q9UKA8	241 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	GINS2	Q9Y248	185 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	SSX2IP	Q9Y2D8	614 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	SH3BP1	Q9Y3L3	701 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	PCDHGA5	Q9Y5G8	931 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	CACNA1I	Q9P0X4	2223 aa		6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	USP9X	Q93008	2570 aa	Predicted RBP	6.62	□□□□□ -1.35
ATXN3-223	ENST00000553686	TTC3	P53804	2025 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	MYO18B	Q8IUG5	2567 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	SMIM35	A0A1B0GVV1	85 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	NT5C1B-RDH14	C9J2C7	533 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	INPPL1	O15357	1258 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	FIBP	O43427	364 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	KDM1A	O60341	852 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	C1R	P00736	705 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	ZFY	P08048	801 aa	Predicted RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	CNP	P09543	421 aa	Known RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	CLEC2L	P0C7M8	214 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	GAA	P10253	952 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	NCL	P19338	710 aa	Known RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	TCF7	P36402	384 aa	Predicted RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	HSD17B4	P51659	736 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	SP4	Q02446	784 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	CD69	Q07108	199 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	SLFN5	Q08AF3	891 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	TRAF1	Q13077	416 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	WTAP	Q15007	396 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	CDC37	Q16543	378 aa	Predicted RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	USP39	Q53GS9	565 aa	Known RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	GET4	Q7L5D6	327 aa	Predicted RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	PPP1R14C	Q8TAE6	165 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	CHAC2	Q8WUX2	184 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	KIF1BP	Q96EK5	621 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	IGSF21	Q96ID5	467 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	BBC3	Q96PG8	261 aa	Predicted RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	RPP25	Q9BUL9	199 aa	Known RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	UBA5	Q9GZZ9	404 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	PLEKHA4	Q9H4M7	779 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	MAN1C1	Q9NR34	630 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	VPS45	Q9NRW7	570 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	MRPL17	Q9NRX2	175 aa	Known RBP	6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	TMPRSS11E	Q9UL52	423 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	CDH7	Q9ULB5	785 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	EXOC6B	Q9Y2D4	811 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	SPTA1	P02549	2419 aa		6.61	□□□□□ -1.35
ATXN3-223	ENST00000553686	CAPN8	A6NHC0	703 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686		H0Y626	953 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	GPAA1	O43292	621 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	TRIM16	O95361	564 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	TOP3B	O95985	862 aa	Known RBP	6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	GLUD1	P00367	558 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	XPA	P23025	273 aa	Predicted RBP	6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	MARK3	P27448	753 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	MANF	P55145	182 aa	Known RBP	6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	GHRHR	Q02643	423 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	CT47A1	Q5JQC4	288 aa	Predicted RBP	6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	PARM1	Q6UWI2	310 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	CACNA2D4	Q7Z3S7	1137 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	CMTM4	Q8IZR5	234 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	SPEM1	Q8N4L4	309 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	RNF169	Q8NCN4	708 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	FGF14	Q92915	247 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	INPP4A	Q96PE3	977 aa	Predicted RBP	6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	NT5C3A	Q9H0P0	336 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	SLC32A1	Q9H598	525 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	AZI2	Q9H6S1	392 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	LMAN1L	Q9HAT1	526 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	TCP11L1	Q9NUJ3	509 aa		6.6	□□□□□ -1.35
ATXN3-223	ENST00000553686	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	6.6	□□□□□ -1.35

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms