RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ETFBKMTQ8IXQ9 262 aa14.67□□□□□ -0.06
PTCH1-226ENST00000553011 CPXM2Q8N436 756 aa14.67□□□□□ -0.06
PTCH1-226ENST00000553011 DTWD2Q8NBA8 298 aa14.67□□□□□ -0.06
PTCH1-226ENST00000553011 EZH1Q92800 747 aaPredicted RBP14.67□□□□□ -0.06
PTCH1-226ENST00000553011 TBCBQ99426 244 aa14.67□□□□□ -0.06
PTCH1-226ENST00000553011 ARHGAP20Q9P2F6 1191 aa14.67□□□□□ -0.06
PTCH1-226ENST00000553011 RAPGEFL1Q9UHV5 662 aa14.67□□□□□ -0.06
PTCH1-226ENST00000553011 STOML2Q9UJZ1 356 aa14.67□□□□□ -0.06
PTCH1-226ENST00000553011 STAP1Q9ULZ2 295 aa14.67□□□□□ -0.06
PTCH1-226ENST00000553011 BZW2Q9Y6E2 419 aaKnown RBP14.67□□□□□ -0.06
PTCH1-226ENST00000553011 DOCK4Q8N1I0 1966 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 TCRBV5S1A1TA0A578 114 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 ANTXRLA6NF34 631 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 GFRA2O00451 464 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 CACNG3O60359 315 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 PENKP01210 267 aaPredicted RBP14.66□□□□□ -0.06
PTCH1-226ENST00000553011 TPM1P09493 284 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 GZMAP12544 262 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 RRM1P23921 792 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 SLC6A4P31645 630 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 HNRNPH3P31942 346 aaKnown RBP14.66□□□□□ -0.06
PTCH1-226ENST00000553011 GBP1P32455 592 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 RPS9P46781 194 aaKnown RBP14.66□□□□□ -0.06
PTCH1-226ENST00000553011 SLC11A2P49281 568 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 SGSHP51688 502 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 ATXN1P54253 815 aaKnown RBP14.66□□□□□ -0.06
PTCH1-226ENST00000553011 ADKP55263 362 aaKnown RBP14.66□□□□□ -0.06
PTCH1-226ENST00000553011 TBX2Q13207 712 aaPredicted RBP14.66□□□□□ -0.06
PTCH1-226ENST00000553011 LRRC32Q14392 662 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 GAS6Q14393 721 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 FAM133BQ5BKY9 247 aaKnown RBP14.66□□□□□ -0.06
PTCH1-226ENST00000553011 DGKKQ5KSL6 1271 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 FYB2Q5VWT5 728 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 WDR59Q6PJI9 974 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 PHTF2Q8N3S3 785 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 C3orf20Q8ND61 904 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 OR8K1Q8NGG5 319 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 RXFP2Q8WXD0 754 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 RNF34Q969K3 372 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 NT5C3BQ969T7 300 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 AZIN2Q96A70 460 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 CFAP57Q96MR6 1250 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 PNKPQ96T60 521 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 DNAJC7Q99615 494 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.66□□□□□ -0.06
PTCH1-226ENST00000553011 SELENOOQ9BVL4 669 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 CHRDQ9H2X0 955 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 PIGVQ9NUD9 493 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 DNAJC17Q9NVM6 304 aaKnown RBP14.66□□□□□ -0.06
PTCH1-226ENST00000553011 RRN3Q9NYV6 651 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 ADAMTS1Q9UHI8 967 aa14.66□□□□□ -0.06
PTCH1-226ENST00000553011 A0A087X0T9 212 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 C2CD4BA6NLJ0 364 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 KCNU1A8MYU2 1149 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 ATMINO43313 823 aaPredicted RBP14.65□□□□□ -0.06
PTCH1-226ENST00000553011 MFAP3LO75121 409 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 KAT7O95251 611 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 FTLP02792 175 aaPredicted RBP14.65□□□□□ -0.06
PTCH1-226ENST00000553011 FAM228BP0C875 321 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 KRT3P12035 628 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 PDGFRAP16234 1089 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 DRD1P21728 446 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 RFC1P35251 1148 aaPredicted RBP14.65□□□□□ -0.06
PTCH1-226ENST00000553011 EIF2DP41214 584 aaKnown RBP14.65□□□□□ -0.06
PTCH1-226ENST00000553011 MAGEA9P43362 315 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 ATP11AP98196 1134 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 DEUP1Q05D60 604 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 ARID5BQ14865 1188 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 SLC25A52Q3SY17 297 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 RAB6CQ53S08 254 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 PPP1R2P3Q6NXS1 205 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 DNAJC24Q6P3W2 148 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 PKN3Q6P5Z2 889 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 ARCQ7LC44 396 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 DDI1Q8WTU0 396 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 EXOC4Q96A65 974 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 MYEOVQ96EZ4 313 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 XPO6Q96QU8 1125 aaKnown RBP14.65□□□□□ -0.06
PTCH1-226ENST00000553011 ANP32EQ9BTT0 268 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 RAB6CQ9H0N0 254 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 ARHGEF4Q9NR80 690 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 ABHD10Q9NUJ1 306 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.65□□□□□ -0.06
PTCH1-226ENST00000553011 DEC1Q9P2X7 70 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 CLEC4EQ9ULY5 219 aa14.65□□□□□ -0.06
PTCH1-226ENST00000553011 SIGLEC16A6NMB1 481 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.64□□□□□ -0.07
PTCH1-226ENST00000553011 K7EQS6 105 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 GALR2O43603 387 aaPredicted RBP14.64□□□□□ -0.07
PTCH1-226ENST00000553011 RNF40O75150 1001 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 RTN2O75298 545 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 ADCY5O95622 1261 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 CYBBP04839 570 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 APODP05090 189 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 SLC2A3P11169 496 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 COL9A1P20849 921 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 SDC4P31431 198 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 CCR1P32246 355 aa14.64□□□□□ -0.07
PTCH1-226ENST00000553011 EIF4A3P38919 411 aaKnown RBP14.64□□□□□ -0.07
PTCH1-226ENST00000553011 CXCR3P49682 368 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms