RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 KIAA1841Q6NSI8 718 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 DCLRE1AQ6PJP8 1040 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 CCDC127Q96BQ5 260 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 KLHL5Q96PQ7 755 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 DDX50Q9BQ39 737 aaKnown RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 HERC2P3Q9BVR0 1158 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 SYNCQ9H7C4 482 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 SLC38A7Q9NVC3 462 aa7.95□□□□□ -1.14
LIMA1-216ENST00000552909 DDX43Q9NXZ2 648 aaKnown RBP7.95□□□□□ -1.14
LIMA1-216ENST00000552909 SF3B1O75533 1304 aaKnown RBP eCLIP7.95□□□□□ -1.143e-6■■■■■ 137.9
LIMA1-216ENST00000552909 TMEM189-UBE2V1I3L0A0 370 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 DDX3XO00571 662 aaKnown RBP eCLIP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ADAM12O43184 909 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ASLP04424 464 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 URODP06132 367 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 SPATA31D3P0C874 917 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ETS2P15036 469 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 IL9P15248 144 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 SLC9A1P19634 815 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 TKTP29401 623 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CD151P48509 253 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 GLUD2P49448 558 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 GALCP54803 685 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 DEUP1Q05D60 604 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CALCOCO2Q13137 446 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 KYAT1Q16773 422 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 WDR72Q3MJ13 1102 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 LEXMQ3ZCV2 418 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 TAF1BQ53T94 588 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ACSBG2Q5FVE4 666 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 TJAP1Q5JTD0 557 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 SYCE2Q6PIF2 218 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CCDC137Q6PK04 289 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 RSPO2Q6UXX9 243 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 DSTYKQ6XUX3 929 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 SPATA31D4Q6ZUB0 917 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ST13P4Q8IZP2 240 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 GPD1LQ8N335 351 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 C12orf76Q8N812 135 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 LNX1Q8TBB1 728 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 RFFLQ8WZ73 363 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 POP1Q99575 1024 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 COL25A1Q9BXS0 654 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 IQCGQ9H095 443 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 OSGEPQ9NPF4 335 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 SAR1AQ9NR31 198 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 STX18Q9P2W9 335 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ZFP69BQ9UJL9 534 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 PCDHA3Q9Y5H8 950 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 DOCK6Q96HP0 2047 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 NCANO14594 1321 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 GRXCR2A6NFK2 248 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 FOXO6A8MYZ6 492 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 EXTL3O43909 919 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CCDC22O60826 627 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 KLRC2P26717 231 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 PON1P27169 355 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CCNFP41002 786 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 GCLMP48507 274 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 FMO5P49326 533 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CLCN4P51793 760 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 DNAJC3Q13217 504 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 EXOC3L4Q17RC7 722 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CBWD6Q4V339 395 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CBWD3Q5JTY5 395 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CBWD5Q5RIA9 395 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 LMBRD2Q68DH5 695 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 PTCRAQ6ISU1 281 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 PHLDB3Q6NSJ2 640 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 TMEM184AQ6ZMB5 413 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 MARK2Q7KZI7 788 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 PALB2Q86YC2 1186 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 SRRM1Q8IYB3 904 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 PRELID2Q8N945 189 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 SLC35G2Q8TBE7 412 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 PLEKHO2Q8TD55 490 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 DTX3LQ8TDB6 740 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 SLC22A17Q8WUG5 538 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 NAT14Q8WUY8 206 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 PPP1R14BQ96C90 147 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 MFSD14AQ96MC6 490 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 FBXL18Q96ME1 805 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 UROC1Q96N76 676 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 TUBGCP5Q96RT8 1024 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CDCA3Q99618 268 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 MIPEPQ99797 713 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CLSTN3Q9BQT9 956 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 TTPALQ9BTX7 342 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 CADM1Q9BY67 442 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ASB7Q9H672 318 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 KIAA1586Q9HCI6 787 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ETNK2Q9NVF9 386 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 RBAKQ9NYW8 714 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ANGPTL2Q9UKU9 493 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 UBQLN1Q9UMX0 589 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 ACTL7BQ9Y614 415 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.94□□□□□ -1.14
LIMA1-216ENST00000552909 PLXNA3P51805 1871 aa7.94□□□□□ -1.14
LIMA1-216ENST00000552909 FAM47DPA6NHR8 397 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 SPTLC1O15269 473 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms