RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RALGAPA2Q2PPJ7 1873 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 DNAJC25-GNG10A0A024R161 153 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 SYNJ2BP-COX16A0A087WUM0 186 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 EME2A4GXA9 379 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 DPYSL4O14531 572 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 TRDMT1O14717 391 aaKnown RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 TPP1O14773 563 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 LIN7AO14910 233 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ADCY6O43306 1168 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 SNNO75324 88 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 NPTXRO95502 500 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 LGALS2P05162 132 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 C6orf222P0C671 652 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 CRHR1P34998 444 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 TNFAIP2Q03169 654 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 KLC1Q07866 573 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ARHGAP1Q07960 439 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 STX3Q13277 289 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 FASTKD1Q53R41 847 aaKnown RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 VWA5B1Q5TIE3 1220 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 RNF220Q5VTB9 566 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ATG16L1Q676U5 607 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 NCBP2-AS2Q69YL0 99 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 RIPOR1Q6ZS17 1223 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 TMEM110Q86TL2 294 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 FAM131BQ86XD5 332 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 CRLF3Q8IUI8 442 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 LMNTD2Q8IXW0 634 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ULK2Q8IYT8 1036 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 OR6B3Q8NGW1 331 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 TEKT4Q8WW24 435 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 USP6NLQ92738 828 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 STMN2Q93045 179 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ANKRD27Q96NW4 1050 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 CSPG4P5Q96PW8 444 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF670Q9BS34 389 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 TUBB6Q9BUF5 446 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 SLC4A5Q9BY07 1137 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 PIDD1Q9HB75 910 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 SNTG2Q9NY99 539 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 COX16Q9P0S2 106 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 DLGAP2Q9P1A6 1054 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 PCDHA11Q9Y5I1 949 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 A6NJR5 290 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MDM4O15151 490 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 GCATO75600 419 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 CHRM1P11229 460 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 FGF3P11487 239 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 LMO2P25791 158 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MGAT1P26572 445 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MXRA7P84157 204 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 SLC25A3Q00325 362 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 TUBB3Q13509 450 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 PEX6Q13608 980 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 PDE1CQ14123 709 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 KCTD2Q14681 263 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 DPYSL2Q16555 572 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 FAM187BQ17R55 369 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 N4BP2L1Q5TBK1 243 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 LGSNQ5TDP6 509 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 HEATR6Q6AI08 1181 aaKnown RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 POTEHQ6S545 545 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MAVSQ7Z434 540 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 RSPH3Q86UC2 560 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 TMPRSS6Q8IU80 811 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 CDKL3Q8IVW4 592 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 SCUBE1Q8IWY4 988 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 EXOC8Q8IYI6 725 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 EFCAB3Q8N7B9 438 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 LINC01465Q8N7H1 131 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MCUQ8NE86 351 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 ATXN7L3BQ96GX2 97 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 TBCBQ99426 244 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 NFKBIZQ9BYH8 718 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MAF1Q9H063 256 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 WWP1Q9H0M0 922 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 XAB2Q9HCS7 855 aaKnown RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MOCS1Q9NZB8 636 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 STX18Q9P2W9 335 aaKnown RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 RGS17Q9UGC6 210 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 ITGA11Q9UKX5 1188 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MAGED2Q9UNF1 606 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 DNAJC16Q9Y2G8 782 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 CSADQ9Y600 493 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 A0A0G2JLL6 359 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 SDR42E2A6NKP2 422 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MFSD11O43934 449 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 PRKCGP05129 697 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 CD1EP15812 388 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 TPSB2P20231 275 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 SP100P23497 879 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 ABCG1P45844 678 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 RAP1GDS1P52306 607 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 RABGGTBP53611 331 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 GRIK3Q13003 919 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 TPSAB1Q15661 275 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 KIZQ2M2Z5 673 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 RALGPS1Q5JS13 557 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 TEDDM1Q5T9Z0 273 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 FAM91A1Q658Y4 838 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms