RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CD302Q8IX05 232 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 EME1Q96AY2 570 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 HDAC11Q96DB2 347 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PGM2Q96G03 612 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TTC25Q96NG3 672 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TM9SF2Q99805 663 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SPATA9Q9BWV2 254 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CCDC90BQ9GZT6 254 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 WWP1Q9H0M0 922 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ADAM7Q9H2U9 754 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ATP13A2Q9NQ11 1180 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 AIPL1Q9NZN9 384 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PSMC3IPQ9P2W1 217 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 AURKCQ9UQB9 309 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PCDHA2Q9Y5H9 948 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ARHGAP10A1A4S6 786 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 MEIS3P2A8K0S8 358 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 F5H6K3 240 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SUSD5O60279 629 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 KRT38O76015 456 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PTPRAP18433 802 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TYK2P29597 1187 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 AQP5P55064 265 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 KLRC3Q07444 240 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 STX3Q13277 289 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ANKRD20A4Q4UJ75 823 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ELMSAN1Q6PJG2 1045 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CRELD2Q6UXH1 353 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ZCCHC23Q6ZST2 131 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SCUBE1Q8IWY4 988 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ARL10Q8N8L6 244 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PRELID2Q8N945 189 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 FAM71DQ8N9W8 422 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TCP10LQ8TDR4 215 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 UCMAQ8WVF2 138 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 C12orf42Q96LP6 360 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 GCNAQ96QF7 691 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CCT7Q99832 543 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 DPH2Q9BQC3 489 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CBWD1Q9BRT8 395 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SIKE1Q9BRV8 207 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TMEM120AQ9BXJ8 343 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 R3HDMLQ9H3Y0 253 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 GPRC5CQ9NQ84 441 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CACNA2D2Q9NY47 1150 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SAE1Q9UBE0 346 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CORO1CQ9ULV4 474 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 NENFQ9UMX5 172 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PFASO15067 1338 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 IGSF9BQ9UPX0 1349 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 INO80B-WBP1J3KQ70 363 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 HNRNPRO43390 633 aaKnown RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 TBX1O43435 398 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 ZNF862O60290 1169 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 MGRN1O60291 552 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 CST8O60676 142 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 USP1O94782 785 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 DLGAP3O95886 979 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 PYGLP06737 847 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 WEE2P0C1S8 567 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 ETS1P14921 441 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 NPEPPSP55786 919 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 TSPY1Q01534 308 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 ROR2Q01974 943 aaKnown RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 SLC34A1Q06495 639 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 CYLC2Q14093 348 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 VGLL4Q14135 290 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 KLHL38Q2WGJ6 581 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 SBK1Q52WX2 424 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 ZNF468Q5VIY5 522 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 SYDE2Q5VT97 1194 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 PSAPL1Q6NUJ1 521 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 SESTD1Q86VW0 696 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 MREGQ8N565 214 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 FAM13CQ8NE31 585 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 FBXL13Q8NEE6 735 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 ZNF483Q8TF39 744 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 SCFD2Q8WU76 684 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 CHURC1Q8WUH1 139 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 DCPSQ96C86 337 aaKnown RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 INO80BQ9C086 356 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 ASCC2Q9H1I8 757 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 JMJD4Q9H9V9 463 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 CYP39A1Q9NYL5 469 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 NINJ2Q9NZG7 142 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 PDP2Q9P2J9 529 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 XPO7Q9UIA9 1087 aaKnown RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 ADAMTS5Q9UNA0 930 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 TSC22D4Q9Y3Q8 395 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 V9GYQ6 96 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 ABCB11O95342 1321 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 GOLGA8QA0A0J9YX86 632 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 GOLGA8OA6NCC3 632 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 GOLGA8NF8WBI6 632 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 FCHO1O14526 889 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 ZMPSTE24O75844 475 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 CLPTM1O96005 669 aa5.66□□□□□ -1.5
LIMA1-203ENST00000547825 NME1P15531 152 aaKnown RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 NELFEP18615 380 aaKnown RBP5.66□□□□□ -1.5
LIMA1-203ENST00000547825 MSX2P35548 267 aaPredicted RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms