RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 PKN2Q16513 984 aaKnown RBP12.84□□□□□ -0.35
COL4A6-209ENST00000545689 MARC1Q5VT66 337 aa12.84□□□□□ -0.35
COL4A6-209ENST00000545689 IZUMO2Q6UXV1 221 aa12.84□□□□□ -0.35
COL4A6-209ENST00000545689 ADCK2Q7Z695 626 aa12.84□□□□□ -0.35
COL4A6-209ENST00000545689 NDEL1Q9GZM8 345 aa12.84□□□□□ -0.35
COL4A6-209ENST00000545689 MAF1Q9H063 256 aa12.84□□□□□ -0.35
COL4A6-209ENST00000545689 AP3M1Q9Y2T2 418 aa12.84□□□□□ -0.35
COL4A6-209ENST00000545689 ZNF711Q9Y462 761 aa12.84□□□□□ -0.35
COL4A6-209ENST00000545689 ASTN2O75129 1339 aaPredicted RBP12.83□□□□□ -0.35
COL4A6-209ENST00000545689 E9PBE3 544 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 MEIS2O14770 477 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 KLHL41O60662 606 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 IL17AQ16552 155 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 SGO1Q5FBB7 561 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 OSCP1Q8WVF1 389 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 TBL1YQ9BQ87 522 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 ELOVL4Q9GZR5 314 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 C10orf88Q9H8K7 445 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 TMCO1Q9UM00 188 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 LRCH1Q9Y2L9 728 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 SNX13Q9Y5W8 968 aa12.83□□□□□ -0.35
COL4A6-209ENST00000545689 NID2Q14112 1375 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 ITGAVP06756 1048 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 RXRGP48443 463 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 NCKAP1LP55160 1127 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 PPP3CAQ08209 521 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 LRRC74AQ0VAA2 488 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 CSHL1Q14406 222 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 ATP6AP1LQ52LC2 224 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 LRRC8DQ7L1W4 858 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 POLNQ7Z5Q5 900 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 ALLCQ8N6M5 410 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 TADA1Q96BN2 335 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 LOC102724159A0A0B4J2E5 919 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 ZNF23P17027 643 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 SOAT1P35610 550 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 GLRBP48167 497 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 HK2P52789 917 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 PWP2Q15269 919 aaKnown RBP12.83□□□□□ -0.36
COL4A6-209ENST00000545689 LY6KQ17RY6 165 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 HIC2Q96JB3 615 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 LIASO43766 372 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 HS6ST3Q8IZP7 471 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 MYLK2Q9H1R3 596 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 CHST7Q9NS84 486 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 RBM22Q9NW64 420 aaKnown RBP eCLIP12.83□□□□□ -0.36
COL4A6-209ENST00000545689 COMMD8Q9NX08 183 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 RNF103O00237 685 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 ADIGQ0VDE8 80 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 TMEM132BQ14DG7 1078 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 CCDC92Q53HC0 331 aaPredicted RBP12.83□□□□□ -0.36
COL4A6-209ENST00000545689 SHC3Q92529 594 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 MRPS31Q92665 395 aaKnown RBP12.83□□□□□ -0.36
COL4A6-209ENST00000545689 TNFRSF25Q93038 417 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 L3MBTL3Q96JM7 780 aaPredicted RBP12.83□□□□□ -0.36
COL4A6-209ENST00000545689 NR1H4Q96RI1 486 aaPredicted RBP12.83□□□□□ -0.36
COL4A6-209ENST00000545689 MTG1Q9BT17 334 aaPredicted RBP12.83□□□□□ -0.36
COL4A6-209ENST00000545689 POPDC2Q9HBU9 364 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 NT5MQ9NPB1 228 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 DMAP1Q9NPF5 467 aaPredicted RBP12.83□□□□□ -0.36
COL4A6-209ENST00000545689 ZNF446Q9NWS9 450 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 TNFSF13BQ9Y275 285 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 PCDHB5Q9Y5E4 795 aa12.83□□□□□ -0.36
COL4A6-209ENST00000545689 SLC12A8A0AV02 714 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 NR5A2O00482 541 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 MBL2P11226 248 aaPredicted RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 MZF1P28698 734 aaPredicted RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 MMRN1Q13201 1228 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 R3HDM1Q15032 1099 aaKnown RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 CNGA2Q16280 664 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 DEFB107AQ8IZN7 70 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 B4GALNT2Q8NHY0 566 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 ZFRQ96KR1 1074 aaKnown RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 LBHD1Q9BQE6 289 aaPredicted RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 ETNK2Q9NVF9 386 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 CLUHO75153 1309 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 ATXN2Q99700 1313 aaKnown RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 RTN3O95197 1032 aaPredicted RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 SERPIND1P05546 499 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 MGAT1P26572 445 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 SKIV2L2P42285 1042 aaKnown RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 PRIM2P49643 509 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 DLG3Q92796 817 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 KCTD14Q9BQ13 255 aaPredicted RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 SHCBP1LQ9BZQ2 653 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 DDX28Q9NUL7 540 aaKnown RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 OPLAHO14841 1288 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 MAP3K6O95382 1288 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 SERPINF2P08697 491 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 AMPD2Q01433 879 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 PPATQ06203 517 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 EFEMP1Q12805 493 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 VSIG10LQ86VR7 867 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 TTC30AQ86WT1 665 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 SEPT8Q92599 483 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 ENTPD7Q9NQZ7 604 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 C15orf38-AP3S2A0A0A6YYH1 394 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 FGF10O15520 208 aaPredicted RBP12.82□□□□□ -0.36
COL4A6-209ENST00000545689 ATP9AO75110 1047 aa12.82□□□□□ -0.36
COL4A6-209ENST00000545689 LYPLA2O95372 231 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms