RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 OR2I1PQ8NGU4 316 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 ZNF592Q92610 1267 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 THAP11Q96EK4 314 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 ZNF419Q96HQ0 510 aaPredicted RBP8.87□□□□□ -0.99
USP28-215ENST00000545608 UCN2Q96RP3 112 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 CDK5RAP1Q96SZ6 601 aaKnown RBP8.87□□□□□ -0.99
USP28-215ENST00000545608 ULBP1Q9BZM6 244 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 DCLK3Q9C098 648 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 DNAI2Q9GZS0 605 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 CAPN10Q9HC96 672 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 MARCH2Q9P0N8 246 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 THAP10Q9P2Z0 257 aaPredicted RBP8.87□□□□□ -0.99
USP28-215ENST00000545608 AGO1Q9UL18 857 aaKnown RBP8.87□□□□□ -0.99
USP28-215ENST00000545608 SLC27A6Q9Y2P4 619 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 COQ4Q9Y3A0 265 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 CHD8Q9HCK8 2581 aa8.87□□□□□ -0.99
USP28-215ENST00000545608 STX10O60499 249 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 PROS1P07225 676 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 SERPINF2P08697 491 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 MAOBP27338 520 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 HOXD12P35452 270 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 CHKAP35790 457 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 IL12RB1P42701 662 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 TKTL1P51854 596 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 ATXN3P54252 364 aaPredicted RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 GFPT1Q06210 699 aaPredicted RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 LRMPQ12912 555 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 SEMA3BQ13214 749 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 ENPP2Q13822 863 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 GOLGA7BQ2TAP0 167 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 FUT11Q495W5 492 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 DCAF17Q5H9S7 520 aaPredicted RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 TCERG1LQ5VWI1 586 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 ANKRD40Q6AI12 368 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 KIAA1324Q6UXG2 1013 aaKnown RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 RSRC2Q7L4I2 434 aaKnown RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 PIP4P1Q86T03 277 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 ZC3H3Q8IXZ2 948 aaKnown RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 FMR1NBQ8N0W7 255 aaPredicted RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 ARHGAP18Q8N392 663 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 CPXM2Q8N436 756 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 TTC39CQ8N584 583 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 RBBP8NLQ8NC74 664 aaPredicted RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 ARMC2Q8NEN0 867 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 CEP76Q8TAP6 659 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 UBA3Q8TBC4 463 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 ERCC4Q92889 916 aaPredicted RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 PIWIL1Q96J94 861 aaKnown RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 HSPA12BQ96MM6 686 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 GTPBP2Q9BX10 602 aaKnown RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 MKRN2Q9H000 416 aaKnown RBP8.86□□□□□ -0.99
USP28-215ENST00000545608 TSPAN16Q9UKR8 245 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 STRIP2Q9ULQ0 834 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 ATP6V1DQ9Y5K8 247 aa8.86□□□□□ -0.99
USP28-215ENST00000545608 ASCC3Q8N3C0 2202 aaKnown RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 SPAARA0A1B0GVQ0 90 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 TRIM49BA6NDI0 452 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 KCNJ18B7U540 433 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 XPO1O14980 1071 aaKnown RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 ATP9BO43861 1147 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 TSPAN3O60637 253 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 NDUFS2O75306 463 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 ZBED1O96006 694 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 F12P00748 615 aaPredicted RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 CYBBP04839 570 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 FBXO45P0C2W1 286 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 DEKP35659 375 aaKnown RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 FAM193AP78312 1265 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 FKBP3Q00688 224 aaKnown RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 CUL2Q13617 745 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 ZNF234Q14588 700 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 STARD3Q14849 445 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 TRIP4Q15650 581 aaPredicted RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 COBLL1Q53SF7 1204 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 SGO2Q562F6 1265 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 ZNF658Q5TYW1 1059 aaPredicted RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 BSPRYQ5W0U4 402 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 TMEM215Q68D42 235 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 UNQ6494/PRO21346Q6UXR6 183 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 TMPRSS6Q8IU80 811 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 FMNL3Q8IVF7 1028 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 FAM217AQ8IXS0 508 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 RGL4Q8IZJ4 473 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 MINDY1Q8N5J2 469 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 UBR7Q8N806 425 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 ENGASEQ8NFI3 743 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 DDI1Q8WTU0 396 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 SORCS1Q8WY21 1168 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 EDEM1Q92611 657 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 TOE1Q96GM8 510 aaKnown RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 TSG101Q99816 390 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 SCNM1Q9BWG6 230 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 SLC32A1Q9H598 525 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 FAM124BQ9H5Z6 455 aaPredicted RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 PRDM16Q9HAZ2 1276 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 LRRC4Q9HBW1 653 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 ITM2CQ9NQX7 267 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 RMND1Q9NWS8 449 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 ELOVL2Q9NXB9 296 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 WSB2Q9NYS7 404 aaPredicted RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms