RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 LMNTD2Q8IXW0 634 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 ENDOVQ8N8Q3 282 aaKnown RBP15.53■□□□□ 0.08
USP28-214ENST00000545540 FBXO41Q8TF61 875 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 SSU72Q9NP77 194 aaKnown RBP15.53■□□□□ 0.08
USP28-214ENST00000545540 SETD4Q9NVD3 440 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 CPSF2Q9P2I0 782 aaKnown RBP15.53■□□□□ 0.08
USP28-214ENST00000545540 SLC7A8Q9UHI5 535 aa15.53■□□□□ 0.08
USP28-214ENST00000545540 HBP1O60381 514 aa15.52■□□□□ 0.08
USP28-214ENST00000545540 IL18RAPO95256 599 aa15.52■□□□□ 0.08
USP28-214ENST00000545540 LGALS2P05162 132 aa15.52■□□□□ 0.08
USP28-214ENST00000545540 CCR10P46092 362 aa15.52■□□□□ 0.08
USP28-214ENST00000545540 RBP5P82980 135 aa15.52■□□□□ 0.08
USP28-214ENST00000545540 C10orf107Q8IVU9 208 aa15.52■□□□□ 0.08
USP28-214ENST00000545540 EBNA1BP2Q99848 306 aaKnown RBP15.52■□□□□ 0.08
USP28-214ENST00000545540 BATF3Q9NR55 127 aa15.52■□□□□ 0.08
USP28-214ENST00000545540 KRT82Q9NSB4 513 aa15.52■□□□□ 0.08
USP28-214ENST00000545540 HESX1Q9UBX0 185 aa15.52■□□□□ 0.08
USP28-214ENST00000545540 KRT38O76015 456 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 ALDOAP04075 364 aaKnown RBP15.52■□□□□ 0.07
USP28-214ENST00000545540 TPH1P17752 444 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 VHLP40337 213 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 BOLA3Q53S33 107 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 DCAF6Q58WW2 860 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 TCHHL1Q5QJ38 904 aaPredicted RBP15.52■□□□□ 0.07
USP28-214ENST00000545540 CHSY1Q86X52 802 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 PNPLA1Q8N8W4 532 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 SPDYE1Q8NFV5 336 aaPredicted RBP15.52■□□□□ 0.07
USP28-214ENST00000545540 NXF3Q9H4D5 531 aaKnown RBP15.52■□□□□ 0.07
USP28-214ENST00000545540 TLE6Q9H808 572 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 PRMT7Q9NVM4 692 aaPredicted RBP15.52■□□□□ 0.07
USP28-214ENST00000545540 GOLGA8QA0A0J9YX86 632 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 GOLGA8OA6NCC3 632 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 GOLGA8NF8WBI6 632 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 SMIM24O75264 130 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 STK10O94804 968 aaKnown RBP15.52■□□□□ 0.07
USP28-214ENST00000545540 OCRLQ01968 901 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 SLC34A1Q06495 639 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 KLC1Q07866 573 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 SCUBE1Q8IWY4 988 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 COLGALT1Q8NBJ5 622 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 SLC2A14Q8TDB8 520 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 CSPG4P5Q96PW8 444 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 XAB2Q9HCS7 855 aaKnown RBP15.52■□□□□ 0.07
USP28-214ENST00000545540 ERAP1Q9NZ08 941 aa15.52■□□□□ 0.07
USP28-214ENST00000545540 HBS1LQ9Y450 684 aaKnown RBP15.52■□□□□ 0.07
USP28-214ENST00000545540 NUP205Q92621 2012 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 PARP14Q460N5 1801 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 P4HA1P13674 534 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 PSMB4P28070 264 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 ULK2Q8IYT8 1036 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 GSDMBQ8TAX9 411 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 SH3TC2Q8TF17 1288 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 OSMRQ99650 979 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 MTMR10Q9NXD2 777 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 SNX10Q9Y5X0 201 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 KIF1CO43896 1103 aaKnown RBP15.51■□□□□ 0.07
USP28-214ENST00000545540 MFSD11O43934 449 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 TSPAN1O60635 241 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 BPGMP07738 259 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 ITGA9Q13797 1035 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 PDE1CQ14123 709 aaPredicted RBP15.51■□□□□ 0.07
USP28-214ENST00000545540 DPY19L2Q6NUT2 758 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 AGAP2Q99490 1192 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 RNF39Q9H2S5 420 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 PPCSQ9HAB8 311 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 TMEM216Q9P0N5 145 aa15.51■□□□□ 0.07
USP28-214ENST00000545540 CCDC189A1A4V9 331 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 BEST1O76090 585 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 AMHP03971 560 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 CCNG1P51959 295 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 TEX44Q53QW1 395 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 IZUMO2Q6UXV1 221 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 PLPPR4Q7Z2D5 763 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 ACVR1CQ8NER5 493 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 LENG1Q96BZ8 264 aaPredicted RBP15.5■□□□□ 0.07
USP28-214ENST00000545540 SYBUQ9NX95 663 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 EMCNQ9ULC0 261 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 SPECC1L-ADORA2AF8WAN1 911 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 SPTLC1O15269 473 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 ATP9BO43861 1147 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 LGSNQ5TDP6 509 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 LPCAT4Q643R3 524 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 KDELC2Q7Z4H8 507 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 PLD6Q8N2A8 252 aaKnown RBP15.5■□□□□ 0.07
USP28-214ENST00000545540 SLC35F5Q8WV83 523 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 FETUBQ9UGM5 382 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 CORO1CQ9ULV4 474 aaPredicted RBP15.5■□□□□ 0.07
USP28-214ENST00000545540 A6NHS1 94 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 CAPN14A8MX76 684 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 E9PBE3 544 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 NEMP1O14524 444 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 KLHL41O60662 606 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 PROCP04070 461 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 PRKCHP24723 683 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 ATG16L1Q676U5 607 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 SLC9A4Q6AI14 798 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 ARMCX2Q7L311 632 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 SPATA6LQ8N4H0 392 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 RNF148Q8N7C7 305 aa15.5■□□□□ 0.07
USP28-214ENST00000545540 ZNF398Q8TD17 642 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms