RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 FAM124AQ86V42 546 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 CACUL1Q86Y37 369 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 CPXM2Q8N436 756 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 TMEM174Q8WUU8 243 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 SORCS1Q8WY21 1168 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 BIRC7Q96CA5 298 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 SLC2A11Q9BYW1 496 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 TMEM245Q9H330 911 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 DMAC2Q9NW81 257 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 NAGPAQ9UK23 515 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 AGO1Q9UL18 857 aaKnown RBP13.46□□□□□ -0.25
USP28-212ENST00000544750 ATMQ13315 3056 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 ZNF462Q96JM2 2506 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 COL6A6A6NMZ7 2263 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 PLK4O00444 970 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 ATXN7O15265 892 aaPredicted RBP13.45□□□□□ -0.26
USP28-212ENST00000544750 TLX3O43711 291 aaPredicted RBP13.45□□□□□ -0.26
USP28-212ENST00000544750 EXOC3O60645 756 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 YEATS4O95619 227 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 RPN1P04843 607 aaKnown RBP13.45□□□□□ -0.26
USP28-212ENST00000544750 HLA-EP13747 358 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 CORO1AP31146 461 aaKnown RBP13.45□□□□□ -0.26
USP28-212ENST00000544750 CCT8P50990 548 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 DLG4P78352 724 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 COG7P83436 770 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 AMPD3Q01432 767 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 E2F5Q15329 346 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 TEAD4Q15561 434 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 KNOP1Q1ED39 458 aaKnown RBP13.45□□□□□ -0.26
USP28-212ENST00000544750 SPOPLQ6IQ16 392 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 LAYNQ6UX15 382 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 TMPRSS12Q86WS5 348 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 SLC39A7Q92504 469 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 TAF4BQ92750 862 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 JAKMIP2Q96AA8 810 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 CYFIP2Q96F07 1278 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 DCLK3Q9C098 648 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 LHX5Q9H2C1 402 aa13.45□□□□□ -0.26
USP28-212ENST00000544750 C10orf142B7Z368 130 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 SPTLC2O15270 562 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 TIMM44O43615 452 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 PPP6R2O75170 966 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 P4HA1P13674 534 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 CD27P26842 260 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 CASP1P29466 404 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 EIF2S3P41091 472 aaKnown RBP13.44□□□□□ -0.26
USP28-212ENST00000544750 PDE4CQ08493 712 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 STK38Q15208 465 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 FOXD4L6Q3SYB3 417 aaPredicted RBP13.44□□□□□ -0.26
USP28-212ENST00000544750 C1orf220Q5T0J3 134 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 SERPINA13PQ6UXR4 307 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 FOXD4L3Q6VB84 417 aaPredicted RBP13.44□□□□□ -0.26
USP28-212ENST00000544750 KIAA0907Q7Z7F0 614 aaPredicted RBP13.44□□□□□ -0.26
USP28-212ENST00000544750 TADA2BQ86TJ2 420 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 DENND1CQ8IV53 801 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 SLC9A9Q8IVB4 645 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 LSM14AQ8ND56 463 aaKnown RBP13.44□□□□□ -0.26
USP28-212ENST00000544750 PIP4K2CQ8TBX8 421 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 SNX19Q92543 992 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 ZNF396Q96N95 335 aaPredicted RBP13.44□□□□□ -0.26
USP28-212ENST00000544750 DCBLD2Q96PD2 775 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 CDK5RAP1Q96SZ6 601 aaKnown RBP13.44□□□□□ -0.26
USP28-212ENST00000544750 CIPCQ9C0C6 399 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 SLC39A2Q9NP94 309 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 RASAL2Q9UJF2 1139 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 PCDHGA1Q9Y5H4 931 aa13.44□□□□□ -0.26
USP28-212ENST00000544750 A0A1B0GTQ1 180 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 SEMA4FO95754 770 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 RALAP11233 206 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 HOXD9P28356 352 aaPredicted RBP13.43□□□□□ -0.26
USP28-212ENST00000544750 HLA-FP30511 346 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 DNM1Q05193 864 aaKnown RBP13.43□□□□□ -0.26
USP28-212ENST00000544750 EFEMP1Q12805 493 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 SV2AQ7L0J3 742 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 ZC3H3Q8IXZ2 948 aaKnown RBP13.43□□□□□ -0.26
USP28-212ENST00000544750 DHX58Q96C10 678 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 DUSP16Q9BY84 665 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 BTBD1Q9H0C5 482 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 RAI2Q9Y5P3 530 aa13.43□□□□□ -0.26
USP28-212ENST00000544750 DFNA5O60443 496 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 CYBBP04839 570 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 IGHV4-34P06331 123 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 HMBSP08397 361 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 PLA2G2AP14555 144 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 CLDN6P56747 220 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 RPS14P62263 151 aaKnown RBP13.42□□□□□ -0.26
USP28-212ENST00000544750 IL9RQ01113 521 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 ZBTB16Q05516 673 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 RTP5Q14D33 572 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 SHBQ15464 509 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 PPP1R26Q5T8A7 1209 aaPredicted RBP13.42□□□□□ -0.26
USP28-212ENST00000544750 SHC4Q6S5L8 630 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 ADIPOR2Q86V24 386 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 ZNF366Q8N895 744 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP28-212ENST00000544750 IQUBQ8NA54 791 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 TMC2Q8TDI7 906 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 DDI1Q8WTU0 396 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 NXPE2Q96DL1 559 aa13.42□□□□□ -0.26
USP28-212ENST00000544750 NT5C1AQ9BXI3 368 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms