RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SLFN11	Q7Z7L1	901 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	BBS7	Q8IWZ6	715 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	RNF10	Q8N5U6	811 aa	Known RBP	10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	KIAA1524	Q8TCG1	905 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	ADAMTS19	Q8TE59	1207 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	DEPDC1B	Q8WUY9	529 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	NXPE3	Q969Y0	559 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	BTN2A3P	Q96KV6	586 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	LRRC3B	Q96PB8	259 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	LINC00597	Q9H2U6	94 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	BRD9	Q9H8M2	597 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	ZWILCH	Q9H900	591 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	KCNK12	Q9HB15	430 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	IGSF9	Q9P2J2	1179 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	SALL4	Q9UJQ4	1053 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	AGO1	Q9UL18	857 aa	Known RBP	10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	USP18	Q9UMW8	372 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	HYOU1	Q9Y4L1	999 aa		10.54	□□□□□ -0.72
CPSF7-221	ENST00000543545	GOLGA6L7	A0A1B0GV03	622 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	KCNU1	A8MYU2	1149 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	TRDMT1	O14717	391 aa	Known RBP	10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	TSPAN3	O60637	253 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	LRCH4	O75427	683 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	PAGE1	O75459	146 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	PALM	O75781	387 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	IGLV3-27	P01718	113 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	TCF3	P15923	654 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	COMT	P21964	271 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	MAN1A1	P33908	653 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	HADHB	P55084	474 aa	Known RBP	10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	MTA1	Q13330	715 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	EIF4EBP2	Q13542	120 aa	Predicted RBP	10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	PDGFRL	Q15198	375 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	BOLA3	Q53S33	107 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	ODF2	Q5BJF6	829 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	EFHC2	Q5JST6	749 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	CHSY1	Q86X52	802 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	SYCE1	Q8N0S2	351 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	SLC44A3	Q8N4M1	653 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	ARFGAP1	Q8N6T3	406 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	CCDC185	Q8N715	623 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	NIPA2	Q8N8Q9	360 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	RIN3	Q8TB24	985 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	OSCP1	Q8WVF1	389 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	ZFYVE19	Q96K21	471 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	ALS2CR12	Q96Q35	445 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	GOLPH3	Q9H4A6	298 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	TMPRSS4	Q9NRS4	437 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	ARHGEF38	Q9NXL2	777 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	XPO7	Q9UIA9	1087 aa	Known RBP	10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	SNX10	Q9Y5X0	201 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	ALG6	Q9Y672	507 aa		10.53	□□□□□ -0.72
CPSF7-221	ENST00000543545	PTPRD	P23468	1912 aa		10.52	□□□□□ -0.72
CPSF7-221	ENST00000543545	ATG2A	Q2TAZ0	1938 aa		10.52	□□□□□ -0.72
CPSF7-221	ENST00000543545	MTCL1	Q9Y4B5	1905 aa	Known RBP	10.52	□□□□□ -0.72
CPSF7-221	ENST00000543545	GOLGA6L9	A6NEM1	432 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545		F5H5T6	163 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	CHAD	O15335	359 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	GREM1	O60565	184 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	SRGAP2	O75044	1071 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	NFATC1	O95644	943 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	LATS1	O95835	1130 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	CYBB	P04839	570 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	KRT7	P08729	469 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	CHKA	P35790	457 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	GGCX	P38435	758 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	VCP	P55072	806 aa	Known RBP	10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	FCHO2	Q0JRZ9	810 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	NR1H3	Q13133	447 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	KRT81	Q14533	505 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	SMTNL2	Q2TAL5	461 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	ANO4	Q32M45	955 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	HS1BP3	Q53T59	392 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	KCNT1	Q5JUK3	1230 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	ADGRF1	Q5T601	910 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	ERMARD	Q5T6L9	678 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	RAP1GAP2	Q684P5	730 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	TRIM68	Q6AZZ1	485 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	C11orf63	Q6NUN7	778 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	RFWD3	Q6PCD5	774 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	LRRC31	Q6UY01	552 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545		Q6ZNB5	142 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZNF662	Q6ZS27	426 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	TPGS1	Q6ZTW0	290 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	PEX26	Q7Z412	305 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	BNIPL	Q7Z465	357 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	CPNE8	Q86YQ8	564 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	LGI2	Q8N0V4	545 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	GJD3	Q8N144	294 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	CCAR2	Q8N163	923 aa	Known RBP	10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	TTC8	Q8TAM2	541 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	CSGALNACT1	Q8TDX6	532 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	HSPH1	Q92598	858 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	ATP2A3	Q93084	1043 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	BHMT	Q93088	406 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	AZIN2	Q96A70	460 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	NTAN1	Q96AB6	310 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	OTUB2	Q96DC9	234 aa		10.52	□□□□□ -0.73
CPSF7-221	ENST00000543545	TMA16	Q96EY4	203 aa	Known RBP	10.52	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms