RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 CEP104O60308 925 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 BUB1BO60566 1050 aaPredicted RBP8.76□□□□□ -1.01
CHD4-208ENST00000540960 NPTXRO95502 500 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 FTCDO95954 541 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 HOXA9P31269 272 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 CDH5P33151 784 aaPredicted RBP8.76□□□□□ -1.01
CHD4-208ENST00000540960 CCR2P41597 374 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 MLLT6P55198 1093 aaPredicted RBP8.76□□□□□ -1.01
CHD4-208ENST00000540960 RWDD2BP57060 319 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 OSTNP61366 133 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 INCA1Q0VD86 236 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 PIGHQ14442 188 aaPredicted RBP8.76□□□□□ -1.01
CHD4-208ENST00000540960 CNGA2Q16280 664 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 SV2CQ496J9 727 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 TAF1BQ53T94 588 aaPredicted RBP8.76□□□□□ -1.01
CHD4-208ENST00000540960 SGO2Q562F6 1265 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 ODF2Q5BJF6 829 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 PRSS36Q5K4E3 855 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 RTP2Q5QGT7 225 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 LRRC38Q5VT99 294 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 TAF3Q5VWG9 929 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 HIST2H2BCQ6DN03 193 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 TWF2Q6IBS0 349 aaKnown RBP8.76□□□□□ -1.01
CHD4-208ENST00000540960 JADE1Q6IE81 842 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 C8orf74Q6P047 294 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 TMPRSS7Q7RTY8 843 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 HDXQ7Z353 690 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 ERICH1Q86X53 443 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 RASGEF1CQ8N431 466 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 UBR7Q8N806 425 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 KAT5Q92993 513 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 CAPZA3Q96KX2 299 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 TRAIPQ9BWF2 469 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 GTPBP2Q9BX10 602 aaKnown RBP8.76□□□□□ -1.01
CHD4-208ENST00000540960 NT5C1AQ9BXI3 368 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 PACSIN1Q9BY11 444 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 PARD6BQ9BYG5 372 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 XYLT2Q9H1B5 865 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 CYLDQ9NQC7 956 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.76□□□□□ -1.014e-6■□□□□ 9.3
CHD4-208ENST00000540960 SNTG2Q9NY99 539 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 GTSE1Q9NYZ3 720 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 RASAL2Q9UJF2 1139 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 AGAP1Q9UPQ3 857 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 PIN4Q9Y237 131 aaKnown RBP8.76□□□□□ -1.01
CHD4-208ENST00000540960 GIT1Q9Y2X7 761 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 ALG6Q9Y672 507 aa8.76□□□□□ -1.01
CHD4-208ENST00000540960 ATXN2Q99700 1313 aaKnown RBP8.76□□□□□ -1.01
CHD4-208ENST00000540960 LRRK2Q5S007 2527 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 FANCGO15287 622 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 PSTPIP1O43586 416 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 ABL1P00519 1130 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 CST3P01034 146 aaPredicted RBP8.75□□□□□ -1.01
CHD4-208ENST00000540960 ITGB3P05106 788 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 NFICP08651 508 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 PNMA6AP0CW24 399 aaPredicted RBP8.75□□□□□ -1.01
CHD4-208ENST00000540960 C6P13671 934 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 CD19P15391 556 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 MMP8P22894 467 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 TNFRSF8P28908 595 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 HOXA11P31270 313 aaPredicted RBP8.75□□□□□ -1.01
CHD4-208ENST00000540960 RPL9P32969 192 aaKnown RBP8.75□□□□□ -1.01
CHD4-208ENST00000540960 ASPAP45381 313 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 NOMO3P69849 1222 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 CUL1Q13616 776 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 XKR4Q5GH76 650 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 NAA35Q5VZE5 725 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 LMBRD2Q68DH5 695 aaPredicted RBP8.75□□□□□ -1.01
CHD4-208ENST00000540960 CEP128Q6ZU80 1094 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 ARMCX6Q7L4S7 300 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 ZDHHC17Q8IUH5 632 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 RHOT1Q8IXI2 618 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 SYNPOQ8N3V7 929 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 HDDC3Q8N4P3 179 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 CAMKK1Q8N5S9 505 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 C1orf127Q8N9H9 656 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 URGCPQ8TCY9 931 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 CSGALNACT1Q8TDX6 532 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 STK32AQ8WU08 396 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 DDX27Q96GQ7 796 aaKnown RBP8.75□□□□□ -1.01
CHD4-208ENST00000540960 TMEM176AQ96HP8 235 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 CPB2Q96IY4 423 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 ZFYVE19Q96K21 471 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 TNIP3Q96KP6 325 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 MMS19Q96T76 1030 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 PCDHB18PQ96TA0 734 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 NUSAP1Q9BXS6 441 aaKnown RBP8.75□□□□□ -1.01
CHD4-208ENST00000540960 RAB17Q9H0T7 212 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 SYNCQ9H7C4 482 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 APOBEC3GQ9HC16 384 aaKnown RBP8.75□□□□□ -1.01
CHD4-208ENST00000540960 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.75□□□□□ -1.01
CHD4-208ENST00000540960 MIOSQ9NXC5 875 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 GDAP2Q9NXN4 497 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 CACNG4Q9UBN1 327 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 HESX1Q9UBX0 185 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 SALL4Q9UJQ4 1053 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 PCDHA3Q9Y5H8 950 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 USP9YO00507 2555 aaPredicted RBP8.75□□□□□ -1.01
CHD4-208ENST00000540960 PTPRJQ12913 1337 aa8.75□□□□□ -1.01
CHD4-208ENST00000540960 CACNA1DQ01668 2161 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms