RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 DSTYKQ6XUX3 929 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 SCML4Q8N228 414 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 HTR3CQ8WXA8 447 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 ALKBH8Q96BT7 664 aaKnown RBP14.24□□□□□ -0.13
RTN3-210ENST00000540798 GRAMD1AQ96CP6 724 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 SIGLEC10Q96LC7 697 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 XPNPEP3Q9NQH7 507 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 A0A0U1RQF3 1178 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 DCLK1O15075 740 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 KRT4P19013 534 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 PAX3P23760 479 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 CD52P31358 61 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 CAP1Q01518 475 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 PRKCZQ05513 592 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 LPIN1Q14693 890 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 KCNA10Q16322 511 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 KBTBD12Q3ZCT8 623 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 SYCP2LQ5T4T6 812 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 HHIPL1Q96JK4 782 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 TMPRSS4Q9NRS4 437 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 SLC12A4Q9UP95 1085 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 A0A0A0MRY4 1105 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 YJEFN3A6XGL0 299 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 E7ENQ6 273 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 M0QZQ0 153 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 APRTP07741 180 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 GSTA1P08263 222 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 DEUP1Q05D60 604 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 HEATR6Q6AI08 1181 aaKnown RBP14.24□□□□□ -0.13
RTN3-210ENST00000540798 TRPM8Q7Z2W7 1104 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 SPATA21Q7Z572 469 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 SMARCD1Q96GM5 515 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 SPATA13Q96N96 652 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 KCNK16Q96T55 309 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 ZNF180Q9UJW8 692 aa14.24□□□□□ -0.13
RTN3-210ENST00000540798 TIMM13Q9Y5L4 95 aaPredicted RBP14.24□□□□□ -0.13
RTN3-210ENST00000540798 CASTOR2A6NHX0 329 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 PCSK1P29120 753 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 THPOP40225 353 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 SCTRP47872 440 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 HCAR3P49019 387 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 SLC18A2Q05940 514 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 PTK7Q13308 1070 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 PRPF39Q86UA1 669 aaKnown RBP14.23□□□□□ -0.13
RTN3-210ENST00000540798 ZNF276Q8N554 614 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 MRRFQ96E11 262 aaKnown RBP14.23□□□□□ -0.13
RTN3-210ENST00000540798 ACBD6Q9BR61 282 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 EIF2B3Q9NR50 452 aaKnown RBP14.23□□□□□ -0.13
RTN3-210ENST00000540798 RRN3Q9NYV6 651 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 STARD13Q9Y3M8 1113 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 CAPN7Q9Y6W3 813 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 I6L893 689 aaPredicted RBP14.23□□□□□ -0.13
RTN3-210ENST00000540798 TM9SF1O15321 606 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 PIAS1O75925 651 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 ODC1P11926 461 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 CA4P22748 312 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 CCND3P30281 292 aaPredicted RBP14.23□□□□□ -0.13
RTN3-210ENST00000540798 ADRA1BP35368 520 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 FDFT1P37268 417 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 YWHAGP61981 247 aaKnown RBP eCLIP14.23□□□□□ -0.13
RTN3-210ENST00000540798 ANKRD20A2Q5SQ80 823 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 ANKRD20A1Q5TYW2 823 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 ANKRD20A3Q5VUR7 823 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 PM20D1Q6GTS8 502 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 IRGQQ8WZA9 623 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 XAB2Q9HCS7 855 aaKnown RBP14.23□□□□□ -0.13
RTN3-210ENST00000540798 ANLNQ9NQW6 1124 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 ZC3H7BQ9UGR2 993 aaKnown RBP14.23□□□□□ -0.13
RTN3-210ENST00000540798 FBXW11Q9UKB1 542 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 ARL2BPQ9Y2Y0 163 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 SH3BP1Q9Y3L3 701 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 SQORQ9Y6N5 450 aa14.23□□□□□ -0.13
RTN3-210ENST00000540798 IQANK1A0A1B0GTG1 560 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 SUN1O94901 812 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 MLNP12872 115 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 CDK16Q00536 496 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 GRIK3Q13003 919 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 GALNTL6Q49A17 601 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 RFX8Q6ZV50 586 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 CYS1Q717R9 158 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 PLCD4Q9BRC7 762 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 RAD54BQ9Y620 910 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 ZNF189O75820 626 aaPredicted RBP14.22□□□□□ -0.13
RTN3-210ENST00000540798 DNAJC8O75937 253 aaPredicted RBP14.22□□□□□ -0.13
RTN3-210ENST00000540798 RABGGTBP53611 331 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 ZNF598Q86UK7 904 aaKnown RBP14.22□□□□□ -0.13
RTN3-210ENST00000540798 SLC26A11Q86WA9 606 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 MYLPFQ96A32 169 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 UROC1Q96N76 676 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 LGMNQ99538 433 aa14.22□□□□□ -0.13
RTN3-210ENST00000540798 EBNA1BP2Q99848 306 aaKnown RBP14.22□□□□□ -0.13
RTN3-210ENST00000540798 TMEM88BA6NKF7 163 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 OPHN1O60890 802 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 APOEP02649 317 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 LTFP02788 710 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 DHRS4L1P0CG22 281 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 NEK3P51956 506 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 BIRC2Q13490 618 aa14.21□□□□□ -0.13
RTN3-210ENST00000540798 INTS6LQ5JSJ4 861 aaKnown RBP14.21□□□□□ -0.13
RTN3-210ENST00000540798 STEAP4Q687X5 459 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms