RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 MPP5Q8N3R9 675 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 COA7Q96BR5 231 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 SEPT9Q9UHD8 586 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 NDUFAF1Q9Y375 327 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 SPATA31E1Q6ZUB1 1445 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 CFAP74Q9C0B2 1584 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 SF3B1O75533 1304 aaKnown RBP eCLIP8.96□□□□□ -0.97
YBX3-208ENST00000540447 SSTR3P32745 418 aaPredicted RBP8.96□□□□□ -0.97
YBX3-208ENST00000540447 EIF4A1P60842 406 aaKnown RBP8.96□□□□□ -0.97
YBX3-208ENST00000540447 PIGHQ14442 188 aaPredicted RBP8.96□□□□□ -0.97
YBX3-208ENST00000540447 HSD17B12Q53GQ0 312 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 PCDH20Q8N6Y1 951 aaKnown RBP8.96□□□□□ -0.97
YBX3-208ENST00000540447 ELMO1Q92556 727 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 TMCO6Q96DC7 493 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 PLEKHF1Q96S99 279 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 C7orf25Q9BPX7 421 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 PIDD1Q9HB75 910 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 RDH8Q9NYR8 311 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 ARHGAP20Q9P2F6 1191 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 LIMD1Q9UGP4 676 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 REREQ9P2R6 1566 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 A0A0A6YYK5 440 aaPredicted RBP8.96□□□□□ -0.97
YBX3-208ENST00000540447 FAM172BPA6NC97 362 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 H3BM21 787 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 PDXKO00764 312 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 CST8O60676 142 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 TM7SF2O76062 418 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 SUPT7LO94864 414 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 UFL1O94874 794 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 RBP3P10745 1247 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 PRKAA1Q13131 559 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 TTLL12Q14166 644 aaPredicted RBP8.96□□□□□ -0.97
YBX3-208ENST00000540447 RRP1BQ14684 758 aaKnown RBP8.96□□□□□ -0.97
YBX3-208ENST00000540447 PFKFB3Q16875 520 aaPredicted RBP8.96□□□□□ -0.97
YBX3-208ENST00000540447 KHDRBS2Q5VWX1 349 aaKnown RBP8.96□□□□□ -0.97
YBX3-208ENST00000540447 FNDC8Q8TC99 324 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 PIK3R3Q92569 461 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 SLC4A5Q9BY07 1137 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 ATP10DQ9P241 1426 aa8.96□□□□□ -0.97
YBX3-208ENST00000540447 CD3EAPO15446 510 aaKnown RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 TBX1O43435 398 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 THRBP10828 461 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 FGFR2P21802 821 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 OXCT1P55809 520 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 UBAP2LQ14157 1087 aaKnown RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 N4BP2L1Q5TBK1 243 aaPredicted RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 TRPV1Q8NER1 839 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 ART5Q96L15 291 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 SETDB2Q96T68 719 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 TAS2R1Q9NYW7 299 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 MKLN1Q9UL63 735 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 NPATQ14207 1427 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 ADGRL3Q9HAR2 1447 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 MAGEC1O60732 1142 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 ZMPSTE24O75844 475 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 SERPINA6P08185 405 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 NUDT17P0C025 328 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 CD44P16070 742 aaKnown RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 ADORA1P30542 326 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 RPL35P42766 123 aaKnown RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 GNA12Q03113 381 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 NFX1Q12986 1120 aaKnown RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 BMPR2Q13873 1038 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 FAM102AQ5T9C2 384 aaPredicted RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 MB21D2Q8IYB1 491 aaPredicted RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 IQCKQ8N0W5 287 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 LRRC71Q8N4P6 559 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 ITPKCQ96DU7 683 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 CCNB1IP1Q9NPC3 277 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 RGS18Q9NS28 235 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 PRPF19Q9UMS4 504 aaKnown RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 EIF3LQ9Y262 564 aaKnown RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 RPH3AQ9Y2J0 694 aaPredicted RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 OR14I1A6ND48 311 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 CENPBD1B2RD01 187 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 KPNA3O00505 521 aaPredicted RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 PPM1BO75688 479 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 PEX2P28328 305 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 UBE2SQ16763 222 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 SHROOM1Q2M3G4 852 aaPredicted RBP8.96□□□□□ -0.98
YBX3-208ENST00000540447 ANKS6Q68DC2 871 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 PMF1Q6P1K2 205 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 PKN3Q6P5Z2 889 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 ZNF790Q6PG37 636 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 ECHDC2Q86YB7 292 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 GPD1LQ8N335 351 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 MEIOBQ8N635 442 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 RAB2BQ8WUD1 216 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 TEKT5Q96M29 485 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 CORO1BQ9BR76 489 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 MCUBQ9NWR8 336 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 PLK2Q9NYY3 685 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 C3orf18Q9UK00 162 aa8.96□□□□□ -0.98
YBX3-208ENST00000540447 MAP3K15Q6ZN16 1313 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 KPNA5O15131 536 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 PEX3P56589 373 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 S100A12P80511 92 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 STX4Q12846 297 aa8.95□□□□□ -0.98
YBX3-208ENST00000540447 CDC16Q13042 620 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms