RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 NT5C3BQ969T7 300 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 ADAM2Q99965 735 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 WDR83Q9BRX9 315 aaKnown RBP11.13□□□□□ -0.63
CLIP1-210ENST00000538120 MED10Q9BTT4 135 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 EURLQ9NYK6 297 aa11.13□□□□□ -0.63
CLIP1-210ENST00000538120 GOLGA8MH3BSY2 632 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 I3L4J1 428 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 NRP1O14786 923 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 BANF1O75531 89 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 DAB1O75553 588 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 TMEM63AO94886 807 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 SUN1O94901 812 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 POMCP01189 267 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 FYNP06241 537 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 ALADP13716 330 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 BRAFP15056 766 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 TGM2P21980 687 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 GCAP28676 217 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 RAB27AP51159 221 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 SLC25A52Q3SY17 297 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 CEP128Q6ZU80 1094 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 HFE2Q6ZVN8 426 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 SPATA21Q7Z572 469 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 PCGF5Q86SE9 256 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 ZNF598Q86UK7 904 aaKnown RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 FAM35AQ86V20 835 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 RNF169Q8NCN4 708 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 PCED1BQ96HM7 432 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 CAPNS2Q96L46 248 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 SLC2A13Q96QE2 648 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 STMN4Q9H169 189 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 NRDE2Q9H7Z3 1164 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 KRT82Q9NSB4 513 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 AP4E1Q9UPM8 1137 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 CASP8AP2Q9UKL3 1982 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 HHLA1C9JL84 531 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 NEBLO76041 1014 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 FAM200BP0CF97 657 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 CYP2F1P24903 491 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 STIP1P31948 543 aaKnown RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 BCAR1P56945 870 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 YWHAZP63104 245 aaKnown RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 SLC10A2Q12908 348 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 PPP6R3Q5H9R7 873 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 SYPL2Q5VXT5 272 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 GPRIN1Q7Z2K8 1008 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 RTN4RL1Q86UN2 441 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 PYROXD2Q8N2H3 581 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 LRRN4Q8WUT4 740 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 CKAP2Q8WWK9 683 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 RTP4Q96DX8 246 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 RSRC1Q96IZ7 334 aaKnown RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 TGS1Q96RS0 853 aaKnown RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 KCNK16Q96T55 309 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 NPY6RQ99463 290 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 DHX35Q9H5Z1 703 aaKnown RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 PCDH10Q9P2E7 1040 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 LGALS13Q9UHV8 139 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 CDH9Q9ULB4 789 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 ZMYND8Q9ULU4 1186 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-210ENST00000538120 FZD10Q9ULW2 581 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 USP3Q9Y6I4 520 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 HTTP42858 3142 aa11.12□□□□□ -0.63
CLIP1-210ENST00000538120 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-210ENST00000538120 EIF4E1BA6NMX2 242 aaKnown RBP11.11□□□□□ -0.63
CLIP1-210ENST00000538120 H7C0C1 242 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 NDC80O14777 642 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 STK10O94804 968 aaKnown RBP11.11□□□□□ -0.63
CLIP1-210ENST00000538120 MAP3K6O95382 1288 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 RBL1P28749 1068 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 BRCC3P46736 316 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 ATP5OP48047 213 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 SULT1E1P49888 294 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 TKTL1P51854 596 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 GPX6P59796 221 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 PDIA2Q13087 525 aaKnown RBP11.11□□□□□ -0.63
CLIP1-210ENST00000538120 STAT4Q14765 748 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 RAB41Q5JT25 222 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 CSPG4P5Q96PW8 444 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 LRRC4Q9HBW1 653 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 UBN1Q9NPG3 1134 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 ARHGEF3Q9NR81 526 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 TMPRSS4Q9NRS4 437 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 PRKAG3Q9UGI9 489 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 NAALADL1Q9UQQ1 740 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 HEY1Q9Y5J3 304 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 COMMD10Q9Y6G5 202 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 CLUHO75153 1309 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 CCDC189A1A4V9 331 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 BCLAF3A2AJT9 711 aaKnown RBP11.11□□□□□ -0.63
CLIP1-210ENST00000538120 E7ESA3 106 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 AP1G2O75843 785 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 CABYRO75952 493 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 DESP17661 470 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 NOS2P35228 1153 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 MSH2P43246 934 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 SLC8A3P57103 927 aa11.11□□□□□ -0.63
CLIP1-210ENST00000538120 GBE1Q04446 702 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms