RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 UBE2Q2LH0YL09 131 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 AP4M1O00189 453 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 PMM2O15305 246 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 SPRY2O43597 315 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 PRC1O43663 620 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 SNX2O60749 519 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 NTN1O95631 604 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 MYL4P12829 197 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 FGFR2P21802 821 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 FPR3P25089 353 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 COPAP53621 1224 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 PSG6Q00889 435 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 CERKLQ49MI3 558 aaPredicted RBP4.1□□□□□ -1.75
USP48-215ENST00000534705 GORABQ5T7V8 394 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 PRAMEF17Q5VTA0 474 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 USP49Q70CQ1 688 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 BEND5Q7L4P6 421 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 KRT73Q86Y46 540 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 DENND1AQ8TEH3 1009 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 RITA1Q96K30 269 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 FYTTD1Q96QD9 318 aaKnown RBP4.1□□□□□ -1.75
USP48-215ENST00000534705 HIST1H2AAQ96QV6 131 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 MMS19Q96T76 1030 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 ZBTB26Q9HCK0 441 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 ASIC5Q9NY37 505 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 NKX1-2Q9UD57 310 aaPredicted RBP4.1□□□□□ -1.75
USP48-215ENST00000534705 HPSEQ9Y251 543 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 METP08581 1390 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 CCDC144AA2RUR9 1427 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 PIK3C2GO75747 1445 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 MED1Q15648 1581 aaPredicted RBP4.1□□□□□ -1.75
USP48-215ENST00000534705 TOPAZ1Q8N9V7 1692 aa4.1□□□□□ -1.75
USP48-215ENST00000534705 TRPM3Q9HCF6 1732 aaPredicted RBP4.09□□□□□ -1.75
USP48-215ENST00000534705 RASA4BC9J798 803 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 PRRT4C9JH25 899 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 AGPSO00116 658 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 EXOC5O00471 708 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 CES2O00748 559 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 APAF1O14727 1248 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 KPNA5O15131 536 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 INSIG1O15503 277 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 RASA4O43374 803 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 CREB1P16220 341 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 ADRA1DP25100 572 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 HTR7P34969 479 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 PRIM2P49643 509 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 DIO1P49895 249 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 ITGA8P53708 1063 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 POLGP54098 1239 aaPredicted RBP4.09□□□□□ -1.75
USP48-215ENST00000534705 TBX4P57082 545 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 LMAN2Q12907 356 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 STK3Q13188 491 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 ETFDHQ16134 617 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 MORN5Q5VZ52 161 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 ZNF782Q6ZMW2 699 aaPredicted RBP4.09□□□□□ -1.75
USP48-215ENST00000534705 CCAR1Q8IX12 1150 aaKnown RBP4.09□□□□□ -1.75
USP48-215ENST00000534705 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.09□□□□□ -1.75
USP48-215ENST00000534705 PNPLA1Q8N8W4 532 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 BRI3BPQ8WY22 251 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 ASB2Q96Q27 587 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 MAGEB5Q9BZ81 275 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 FAM50BQ9Y247 325 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 TMEM94Q12767 1356 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 PTCH1Q13635 1447 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 NCOA3Q9Y6Q9 1424 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 ADGRB2O60241 1585 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 CDC42BPGQ6DT37 1551 aa4.09□□□□□ -1.75
USP48-215ENST00000534705 QRICH2Q9H0J4 1663 aa4.09□□□□□ -1.76
USP48-215ENST00000534705 A0A087WZ62 844 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 TCRBV5S1A1TA0A578 114 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 TECPR2O15040 1411 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 EXOC3O60645 756 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 PDE8BO95263 885 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 MT-CO3P00414 261 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 TUBB4AP04350 444 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 KRT18P05783 430 aaKnown RBP4.08□□□□□ -1.76
USP48-215ENST00000534705 MYL1P05976 194 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 NHLRC4P0CG21 123 aaPredicted RBP4.08□□□□□ -1.76
USP48-215ENST00000534705 SNHG28P0DPA3 235 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 APEHP13798 732 aaKnown RBP4.08□□□□□ -1.76
USP48-215ENST00000534705 IDEP14735 1019 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 STT3AP46977 705 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 EIF4A1P60842 406 aaKnown RBP4.08□□□□□ -1.76
USP48-215ENST00000534705 AKAP12Q02952 1782 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 KIF1AQ12756 1690 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 KLF9Q13886 244 aaPredicted RBP4.08□□□□□ -1.76
USP48-215ENST00000534705 RAPGEF1Q13905 1077 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 KCNAB1Q14722 419 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 LARS2Q15031 903 aaKnown RBP4.08□□□□□ -1.76
USP48-215ENST00000534705 FAM187BQ17R55 369 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 RPGRIP1LQ68CZ1 1315 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 MRNIPQ6NTE8 343 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 DHX57Q6P158 1386 aaKnown RBP4.08□□□□□ -1.76
USP48-215ENST00000534705 ZNF66Q6ZN08 573 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 NEK8Q86SG6 692 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 CHSY1Q86X52 802 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 ADGRF5Q8IZF2 1346 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 GALNT16Q8N428 558 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 CCDC33Q8N5R6 958 aa4.08□□□□□ -1.76
USP48-215ENST00000534705 C8orf58Q8NAV2 365 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms